相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Extreme environments and the origins of biodiversity: Adaptation and speciation in sulphide spring fishes
Michael Tobler et al.
MOLECULAR ECOLOGY (2018)
The roles of plasticity and evolutionary change in shaping gene expression variation in natural populations of extremophile fish
Courtney N. Passow et al.
MOLECULAR ECOLOGY (2017)
Convergent evolution of reduced energy demands in extremophile fish
Courtney N. Passow et al.
PLOS ONE (2017)
Contrasting effects of environment and genetics generate a continuum of parallel evolution
Yoel E. Stuart et al.
NATURE ECOLOGY & EVOLUTION (2017)
Molecular evolution of globin genes in Gymnotiform electric fishes: relation to hypoxia tolerance
Ran Tian et al.
BMC EVOLUTIONARY BIOLOGY (2017)
MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins
Sarah E. Calvo et al.
NUCLEIC ACIDS RESEARCH (2016)
The Evolutionary Ecology of Animals Inhabiting Hydrogen Sulfide-Rich Environments
Michael Tobler et al.
ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 47 (2016)
Habitat use by two extremophile, highly endemic, and critically endangered fish species (Gambusia eurystoma and Poecilia sulphuraria; Poeciliidae)
Zachary W. Culumber et al.
AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS (2016)
Sulfide exposure results in enhanced sqr transcription through upregulating the expression and activation of HSF1 in echiuran worm Urechis unicinctus
Xiaolong Liu et al.
AQUATIC TOXICOLOGY (2016)
Extremophile Poeciliidae: multivariate insights into the complexity of speciation along replicated ecological gradients
Rudiger Riesch et al.
BMC EVOLUTIONARY BIOLOGY (2016)
Colonizing the Caribbean: biogeography and evolution of livebearing fishes of the genus Limia(Poeciliidae)
Pablo F. Weaver et al.
JOURNAL OF BIOGEOGRAPHY (2016)
Mechanisms Underlying Adaptation to Life in Hydrogen Sulfide-Rich Environments
Joanna L. Kelley et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Convergent Substitutions in a Sodium Channel Suggest Multiple Origins of Toxin Resistance in Poison Frogs
Rebecca D. Tarvin et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Phylogenetic analyses of the subgenus Mollienesia (Poecilia, Poeciliidae, Teleostei) reveal taxonomic inconsistencies, cryptic biodiversity, and spatio-temporal aspects of diversification in Middle America
Maura Palacios et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2016)
Swimming in polluted waters
Michael Tobler et al.
SCIENCE (2016)
Predictable convergence in hemoglobin function has unpredictable molecular underpinnings
Chandrasekhar Natarajan et al.
SCIENCE (2016)
The genomic landscape of rapid repeated evolutionary adaptation to toxic pollution in wild fish
Noah M. Reid et al.
SCIENCE (2016)
Shared and unique patterns of phenotypic diversification along a stream gradient in two congeneric species
Jonas Jourdan et al.
SCIENTIFIC REPORTS (2016)
PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels
Yongwook Choi et al.
BIOINFORMATICS (2015)
Sulfide Oxidation by a Noncanonical Pathway in Red Blood Cells Generates Thiosulfate and Polysulfides
Victor Vitvitsky et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2015)
Unique evolutionary trajectories in repeated adaptation to hydrogen sulphide-toxic habitats of a neotropical fish (Poecilia mexicana)
Markus Pfenninger et al.
MOLECULAR ECOLOGY (2015)
Species-specific enzymatic tolerance of sulfide toxicity in plant roots
Nicole M. Martin et al.
PLANT PHYSIOLOGY AND BIOCHEMISTRY (2015)
Phylogenetic ANOVA: The Expression Variance and Evolution Model for Quantitative Trait Evolution
Rori V. Rohlfs et al.
SYSTEMATIC BIOLOGY (2015)
The Molecular Basis of Phenotypic Convergence
Erica Bree Rosenblum et al.
ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 45 (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
H2S exposure elicits differential expression of candidate genes in fish adapted to sulfidic and non-sulfidic environments
Michael Tobler et al.
COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY (2014)
Colonisation of toxic environments drives predictable life-history evolution in livebearing fishes (Poeciliidae)
Ruediger Riesch et al.
ECOLOGY LETTERS (2014)
Modeling Gene Expression Evolution with an Extended Ornstein-Uhlenbeck Process Accounting for Within-Species Variation
Rori V. Rohlfs et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
The evolution of the placenta drives a shift in sexual selection in livebearing fish
B. J. A. Pollux et al.
NATURE (2014)
Parallel evolution of cox genes in H2S-tolerant fish as key adaptation to a toxic environment
Markus Pfenninger et al.
NATURE COMMUNICATIONS (2014)
GENETIC DIFFERENTIATION AND SELECTION AGAINST MIGRANTS IN EVOLUTIONARILY REPLICATED EXTREME ENVIRONMENTS
Martin Plath et al.
EVOLUTION (2013)
Mitochondrial-Nuclear Interactions: Compensatory Evolution or Variable Functional Constraint among Vertebrate Oxidative Phosphorylation Genes?
Feifei Zhang et al.
GENOME BIOLOGY AND EVOLUTION (2013)
Proposed function of alternative oxidase in mitochondrial sulphide oxidation detoxification in the Echiuran worm, Urechis unicinctus
Jian Huang et al.
JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM (2013)
Whole-Genome Duplication and the Functional Diversification of Teleost Fish Hemoglobins
Juan C. Opazo et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits
Manfred Schartl et al.
NATURE GENETICS (2013)
The genetic causes of convergent evolution
David L. Stern
NATURE REVIEWS GENETICS (2013)
s Genomic resources for a model in adaptation and speciation research: characterization of the Poecilia mexicana transcriptome
Joanna L. Kelley et al.
BMC GENOMICS (2012)
Small Molecule Signaling Agents: The Integrated Chemistry and Biochemistry of Nitrogen Oxides, Oxides of Carbon, Dioxygen, Hydrogen Sulfide, and Their Derived Species
Jon M. Fukuto et al.
CHEMICAL RESEARCH IN TOXICOLOGY (2012)
PARALLEL AND NONPARALLEL ASPECTS OF ECOLOGICAL, PHENOTYPIC, AND GENETIC DIVERGENCE ACROSS REPLICATE POPULATION PAIRS OF LAKE AND STREAM STICKLEBACK
Renaud Kaeuffer et al.
EVOLUTION (2012)
Gene Duplication and the Evolution of Hemoglobin Isoform Differentiation in Birds
Michael T. Grispo et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2012)
Response of Sulfide:Quinone Oxidoreductase to Sulfide Exposure in the Echiuran Worm Urechis unicinctus
Yu-Bin Ma et al.
MARINE BIOTECHNOLOGY (2012)
jModelTest 2: more models, new heuristics and parallel computing
Diego Darriba et al.
NATURE METHODS (2012)
Predicting the Functional Effect of Amino Acid Substitutions and Indels
Yongwook Choi et al.
PLOS ONE (2012)
Constraint shapes convergence in tetrodotoxin-resistant sodium channels of snakes
Chris R. Feldman et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Community-wide convergent evolution in insect adaptation to toxic cardenolides by substitutions in the Na,K-ATPase
Susanne Dobler et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Evolution of Hemoglobin and Its Genes
Ross C. Hardison
COLD SPRING HARBOR PERSPECTIVES IN MEDICINE (2012)
The therapeutic potential of hydrogen sulfide: separating hype from hope
Kenneth R. Olson
AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY (2011)
Hydrogen Sulfide and Hemeproteins: Knowledge and Mysteries
Ruth Pietri et al.
ANTIOXIDANTS & REDOX SIGNALING (2011)
EVOLUTION IN EXTREME ENVIRONMENTS: REPLICATED PHENOTYPIC DIFFERENTIATION IN LIVEBEARING FISH INHABITING SULFIDIC SPRINGS
Michael Tobler et al.
EVOLUTION (2011)
Convergent Patterns of Body Shape Differentiation in Four Different Clades of Poeciliid Fishes Inhabiting Sulfide Springs
Michael Tobler et al.
EVOLUTIONARY BIOLOGY (2011)
Changes of globin expression in the Japanese medaka (Oryzias latipes) in response to acute and chronic hypoxia
Agnes Wawrowski et al.
JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMS AND ENVIRONMENTAL PHYSIOLOGY (2011)
Transcriptomics of environmental acclimatization and survival in wild adult Pacific sockeye salmon (Oncorhynchus nerka) during spawning migration
Tyler G. Evans et al.
MOLECULAR ECOLOGY (2011)
A framework for variation discovery and genotyping using next-generation DNA sequencing data
Mark A. DePristo et al.
NATURE GENETICS (2011)
Adaptation in the age of ecological genomics: insights from parallelism and convergence
Kathryn R. Elmer et al.
TRENDS IN ECOLOGY & EVOLUTION (2011)
Effects of cadmium on hypoxia-induced expression of hemoglobin and erythropoietin in larval sheepshead minnow, Cyprinodon variegatus
A. J. Dangre et al.
AQUATIC TOXICOLOGY (2010)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
Redox Biochemistry of Hydrogen Sulfide
Omer Kabil et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2010)
Role of epibenthic resource opportunities in the parallel evolution of lake whitefish species pairs (Coregonus sp.)
L. Landry et al.
JOURNAL OF EVOLUTIONARY BIOLOGY (2010)
Phenotypic plasticity and genetic adaptation to high-altitude hypoxia in vertebrates
Jay F. Storz et al.
JOURNAL OF EXPERIMENTAL BIOLOGY (2010)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
Convergent life-history shifts: toxic environments result in big babies in two clades of poeciliids
Ruediger Riesch et al.
NATURWISSENSCHAFTEN (2010)
Adaptive evolution of energy metabolism genes and the origin of flight in bats
Yong-Yi Shen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
A mitochondrial protein compendium elucidates complex I disease biology
David J. Pagliarini et al.
CELL (2008)
Three enzymatic activities catalyze the oxidation of sulfide to thiosulfate in mammalian and invertebrate mitochondria
Tatjana M. Hildebrandt et al.
FEBS JOURNAL (2008)
Globins and hypoxia adaptation in the goldfish, Carassius auratus
Anja Roesner et al.
FEBS JOURNAL (2008)
The inhibition of mitochondrial cytochrome oxidase by the gases carbon monoxide, nitric oxide, hydrogen cyanide and hydrogen sulfide: chemical mechanism and physiological significance
Chris E. Cooper et al.
JOURNAL OF BIOENERGETICS AND BIOMEMBRANES (2008)
Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli
Zachary D. Blount et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Clustal W and clustal X version 2.0
M. A. Larkin et al.
BIOINFORMATICS (2007)
High-altitude adaptations in vertebrate hemoglobins
Roy E. Weber
RESPIRATORY PHYSIOLOGY & NEUROBIOLOGY (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Quantifying the constraining influence of gene flow on adaptive divergence in the lake-stream threespine stickleback system
Jean-Sebastien Moore et al.
EVOLUTION (2007)
A phylogenetic and biogeographic perspective on the evolution of poeciliid fishes
Tomas Hrbek et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2007)
Hypoxia induces a complex response of globin expression in zebrafish (Danio rerio)
Anja Roesner et al.
JOURNAL OF EXPERIMENTAL BIOLOGY (2006)
Hypoxia-inducible myoglobin expression in nonmuscle tissues
J Fraser et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Historical contingency and the purported uniqueness of evolutionary innovations
GJ Vermeij
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
JZ Zhang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
Gene expression profiling of the long-term adaptive response to hypoxia in the gills of adult zebrafish
DLM van der Meer et al.
AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY (2005)
An algorithm for progressive multiple alignment of sequences with insertions
A Löytynoja et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Sulfide binding is mediated by zinc ions discovered in the crystal structure of a hydrothermal vent tubeworm hemoglobin
JF Flores et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Shared and unique features of evolutionary diversification
RB Langerhans et al.
AMERICAN NATURALIST (2004)
Identification of 315 genes essential for early zebrafish development
A Amsterdam et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Functional adaptation and its molecular basis in vertebrate hemoglobins, neuroglobins and cytoglobins
RE Weber et al.
RESPIRATORY PHYSIOLOGY & NEUROBIOLOGY (2004)
Convergent evolution of the cavefish Astyanax (Characidae, Teleostei): genetic evidence from reduced eye-size and pigmentation
H Wilkens et al.
BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2003)
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
ZH Yang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2002)
Comparison of human adult and fetal expression and identification of 535 housekeeping/maintenance genes
JA Warrington et al.
PHYSIOLOGICAL GENOMICS (2000)
分享论文
