相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Gene co-expression analysis for functional classification and gene-disease predictions
Sipko van Dam et al.
BRIEFINGS IN BIOINFORMATICS (2018)
Single-cell barcoding and sequencing using droplet microfluidics
Rapolas Zilionis et al.
NATURE PROTOCOLS (2017)
Multiplexed Engineering and Analysis of Combinatorial Enhancer Activity in Single Cells
Shiqi Xie et al.
MOLECULAR CELL (2017)
Comparative Analysis of Single-Cell RNA Sequencing Methods
Christoph Ziegenhain et al.
MOLECULAR CELL (2017)
chromVAR : inferring transcription-factor-associated accessibility from single-cell epigenomic data
Alicia N. Schep et al.
NATURE METHODS (2017)
SCENIC: single-cell regulatory network inference and clustering
Sara Aibar et al.
NATURE METHODS (2017)
Power analysis of single-cell RNA-sequencing experiments
Valentine Svensson et al.
NATURE METHODS (2017)
Pooled CRISPR screening with single-cell transcriptome readout
Paul Datlinger et al.
NATURE METHODS (2017)
Reversed graph embedding resolves complex single-cell trajectories
Xiaojie Qiu et al.
NATURE METHODS (2017)
Genome-wide base-resolution mapping of DNA methylation in single cells using single-cell bisulfite sequencing( scBS-seq)
Stephen J. Clark et al.
NATURE PROTOCOLS (2017)
Single-Cell Multiomics: Multiple Measurements from Single Cells
Iain C. Macaulay et al.
TRENDS IN GENETICS (2017)
Massively parallel digital transcriptional profiling of single cells
Grace X. Y. Zheng et al.
NATURE COMMUNICATIONS (2017)
Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells
Sebastian Pott
ELIFE (2017)
Gene Regulatory Network Inference from Single-Cell Data Using Multivariate Information Measures
Thalia E. Chan et al.
CELL SYSTEMS (2017)
SCODE: an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation
Hirotaka Matsumoto et al.
BIOINFORMATICS (2017)
MATCHER: manifold alignment reveals correspondence between single cell transcriptome and epigenome dynamics
Joshua D. Welch et al.
GENOME BIOLOGY (2017)
Decoding transcriptional states in cancer
Jasper Wouters et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2017)
DeepCpG: accurate prediction of single-cell DNA methylation states using deep learning
Christof Angermueller et al.
GENOME BIOLOGY (2017)
Single-cell epigenomic variability reveals functional cancer heterogeneity
Ulrike M. Litzenburger et al.
GENOME BIOLOGY (2017)
Beyond editing: repurposing CRISPR-Cas9 for precision genome regulation and interrogation
Antonia A. Dominguez et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2016)
SCOUP: a probabilistic model based on the Ornstein-Uhlenbeck process to analyze single-cell expression data during differentiation
Hirotaka Matsumoto et al.
BMC BIOINFORMATICS (2016)
BTR: training asynchronous Boolean models using single-cell expression data
Chee Yee Lim et al.
BMC BIOINFORMATICS (2016)
Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq
Diego Adhemar Jaitin et al.
CELL (2016)
Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens
Atray Dixit et al.
CELL (2016)
A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response
Britt Adamson et al.
CELL (2016)
Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas
Yu Hou et al.
CELL RESEARCH (2016)
Computational methods for trajectory inference from single-cell transcriptomics
Robrecht Cannoodt et al.
EUROPEAN JOURNAL OF IMMUNOLOGY (2016)
Revealing the vectors of cellular identity with single-cell genomics
Allon Wagner et al.
NATURE BIOTECHNOLOGY (2016)
Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution
M. Ryan Corces et al.
NATURE GENETICS (2016)
Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis
Jean Fan et al.
NATURE METHODS (2016)
Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity
Christof Angermueller et al.
NATURE METHODS (2016)
Adult mouse cortical cell taxonomy revealed by single cell transcriptomics
Bosiljka Tasic et al.
NATURE NEUROSCIENCE (2016)
The origin and evolution of cell types
Detlev Arendt et al.
NATURE REVIEWS GENETICS (2016)
Oligodendrocyte heterogeneity in the mouse juvenile and adult central nervous system
Sueli Marques et al.
SCIENCE (2016)
Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain
Blue B. Lake et al.
SCIENCE (2016)
Multi-Omics of Single Cells: Strategies and Applications
Christoph Bock et al.
TRENDS IN BIOTECHNOLOGY (2016)
Systematic Reconstruction of Molecular Cascades Regulating GP Development Using Single-Cell RNA-Seq
Junxiang Li et al.
CELL REPORTS (2016)
Nonlinear Network Reconstruction from Gene Expression Data Using Marginal Dependencies Measured by DCOL
Haodong Liu et al.
PLOS ONE (2016)
An Automated Microwell Platform for Large-Scale Single Cell RNA-Seq
Jinzhou Yuan et al.
SCIENTIFIC REPORTS (2016)
Simultaneous profiling of transcriptome and DNA methylome from a single cell
Youjin Hu et al.
GENOME BIOLOGY (2016)
Exploiting single-cell expression to characterize co-expression replicability
Megan Crow et al.
GENOME BIOLOGY (2016)
Comparative Analysis of Gene Regulatory Networks: From Network Reconstruction to Evolution
Dawn Thompson et al.
ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, VOL 31 (2015)
Reconstructing gene regulatory dynamics from high-dimensional single-cell snapshot data
Andrea Ocone et al.
BIOINFORMATICS (2015)
Single-Cell Genomics Unveils Critical Regulators of Th17 Cell Pathogenicity
Jellert T. Gaublomme et al.
CELL (2015)
Genome-wide Maps of Nuclear Lamina Interactions in Single Human Cells
Jop Kind et al.
CELL (2015)
Tracing Dynamic Changes of DNA Methylation at Single-Cell Resolution
Yonatan Stelzer et al.
CELL (2015)
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
Evan Z. Macosko et al.
CELL (2015)
Single-cell transcriptogenomics reveals transcriptional exclusion of ENU-mutated alleles
Wenge Li et al.
MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS (2015)
Single-cell chromatin accessibility reveals principles of regulatory variation
Jason D. Buenostro et al.
NATURE (2015)
Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells
Florian Buettner et al.
NATURE BIOTECHNOLOGY (2015)
Decoding the regulatory network of early blood development from single-cell gene expression measurements
Victoria Moignard et al.
NATURE BIOTECHNOLOGY (2015)
Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state
Assaf Rotem et al.
NATURE BIOTECHNOLOGY (2015)
Integrated genome and transcriptome sequencing of the same cell
Siddharth S. Dey et al.
NATURE BIOTECHNOLOGY (2015)
G&T-seq: parallel sequencing of single-cell genomes and transcriptomes
Iain C. Macaulay et al.
NATURE METHODS (2015)
Computational and analytical challenges in single-cell transcriptomics
Oliver Stegle et al.
NATURE REVIEWS GENETICS (2015)
Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq
Amit Zeisel et al.
SCIENCE (2015)
Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing
Darren A. Cusanovich et al.
SCIENCE (2015)
Rapid and efficient one-step generation of paired gRNA CRISPR-Cas9 libraries
Joana A. Vidigal et al.
NATURE COMMUNICATIONS (2015)
Single-Cell Network Analysis Identifies DDIT3 as a Nodal Lineage Regulator in Hematopoiesis
Cristina Pina et al.
CELL REPORTS (2015)
Single-Cell DNA Methylome Sequencing and Bioinformatic Inference of Epigenomic Cell-State Dynamics
Matthias Farlik et al.
CELL REPORTS (2015)
SINCERA: A Pipeline for Single-Cell RNA-Seq Profiling Analysis
Minzhe Guo et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
Single-cell transcriptional analysis to uncover regulatory circuits driving cell fate decisions in early mouse development
Haifen Chen et al.
BIOINFORMATICS (2015)
Synthesising Executable Gene Regulatory Networks from Single-Cell Gene Expression Data
Jasmin Fisher et al.
COMPUTER AIDED VERIFICATION, PT I (2015)
Single-cell ATAC-seq: strength in numbers
Sebastian Pott et al.
GENOME BIOLOGY (2015)
A review on the computational approaches for gene regulatory network construction
Lian En Chai et al.
COMPUTERS IN BIOLOGY AND MEDICINE (2014)
Single-cell RNA-seq reveals dynamic paracrine control of cellular variation
Alex K. Shalek et al.
NATURE (2014)
Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
Sebastien A. Smallwood et al.
NATURE METHODS (2014)
Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma
Anoop P. Patel et al.
SCIENCE (2014)
Multiplex genome engineering in human cells using all-in-one CRISPR/Cas9 vector system
Tetsushi Sakuma et al.
SCIENTIFIC REPORTS (2014)
Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing
Hongshan Guo et al.
GENOME RESEARCH (2013)
DNA methylation: roles in mammalian development
Zachary D. Smith et al.
NATURE REVIEWS GENETICS (2013)
Single-Cell Expression Analyses during Cellular Reprogramming Reveal an Early Stochastic and a Late Hierarchic Phase
Yosef Buganim et al.
CELL (2012)
Navigating cancer network attractors for tumor-specific therapy
Pau Creixell et al.
NATURE BIOTECHNOLOGY (2012)
Wisdom of crowds for robust gene network inference
Daniel Marbach et al.
NATURE METHODS (2012)
Functions of DNA methylation: islands, start sites, gene bodies and beyond
Peter A. Jones
NATURE REVIEWS GENETICS (2012)
Comparing Statistical Methods for Constructing Large Scale Gene Networks
Jeffrey D. Allen et al.
PLOS ONE (2012)
Direct Lineage Conversion of Terminally Differentiated Hepatocytes to Functional Neurons
Samuele Marro et al.
CELL STEM CELL (2011)
Direct Reprogramming of Fibroblasts into Functional Cardiomyocytes by Defined Factors
Masaki Ieda et al.
CELL (2010)
Inferring Regulatory Networks from Expression Data Using Tree-Based Methods
Van Anh Huynh-Thu et al.
PLOS ONE (2010)
mRNA-Seq whole-transcriptome analysis of a single cell
Fuchou Tang et al.
NATURE METHODS (2009)
A census of human transcription factors: function, expression and evolution
Juan M. Vaquerizas et al.
NATURE REVIEWS GENETICS (2009)
WGCNA: an R package for weighted correlation network analysis
Peter Langfelder et al.
BMC BIOINFORMATICS (2008)
Modelling and analysis of gene regulatory networks
Guy Karlebach et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2008)
How to infer gene networks from expression profiles
Mukesh Bansal et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
Kazutoshi Takahashi et al.
CELL (2006)
DNA methylation and human disease
KD Robertson
NATURE REVIEWS GENETICS (2005)
分享论文
