相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Community metabolic modeling approaches to understanding the gut microbiome: Bridging biochemistry and ecology
Helena Mendes-Soares et al.
FREE RADICAL BIOLOGY AND MEDICINE (2017)
Genome-driven evolutionary game theory helps understand the rise of metabolic interdependencies in microbial communities
Ali R. Zomorrodi et al.
NATURE COMMUNICATIONS (2017)
Experimental Evolution of Metabolic Dependency in Bacteria
Glen D'Souza et al.
PLOS GENETICS (2016)
Metabolic dependencies drive species co-occurrence in diverse microbial communities
Aleksej Zelezniak et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Black Queen evolution: the role of leakiness in structuring microbial communities
J. Jeffrey Morris
TRENDS IN GENETICS (2015)
The Tiniest Tiny Genomes
Nancy A. Moran et al.
ANNUAL REVIEW OF MICROBIOLOGY, VOL 68 (2014)
Sympatric Speciation in a Bacterial Endosymbiont Results in Two Genomes with the Functionality of One
James T. Van Leuven et al.
CELL (2014)
LESS IS MORE: SELECTIVE ADVANTAGES CAN EXPLAIN THE PREVALENT LOSS OF BIOSYNTHETIC GENES IN BACTERIA
Glen D'Souza et al.
EVOLUTION (2014)
Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria
Samay Pande et al.
ISME JOURNAL (2014)
Evolutionary limits to cooperation in microbial communities
Nuno M. Oliveira et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Metabolic Resource Allocation in Individual Microbes Determines Ecosystem Interactions and Spatial Dynamics
William R. Harcombe et al.
CELL REPORTS (2014)
Emergent Biosynthetic Capacity in Simple Microbial Communities
Hsuan-Chao Chiu et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Genomic Insights into Syntrophy: The Paradigm for Anaerobic Metabolic Cooperation
Jessica R. Sieber et al.
ANNUAL REVIEW OF MICROBIOLOGY, VOL 66 (2012)
Extreme genome reduction in symbiotic bacteria
John P. McCutcheon et al.
NATURE REVIEWS MICROBIOLOGY (2012)
OptCom: A Multi-Level Optimization Framework for the Metabolic Modeling and Analysis of Microbial Communities
Ali R. Zomorrodi et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Dynamics in the mixed microbial concourse
Edwin H. Wintermute et al.
GENES & DEVELOPMENT (2010)
What is flux balance analysis?
Jeffrey D. Orth et al.
NATURE BIOTECHNOLOGY (2010)
Environments that Induce Synthetic Microbial Ecosystems
Niels Klitgord et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
Population Dynamics Constrain the Cooperative Evolution of Cross-Feeding
James J. Bull et al.
PLOS ONE (2009)
Convergent evolution of metabolic roles in bacterial co-symbionts of insects
John P. McCutcheon et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Physiology, ecology, phylogeny, and genomics of microorganisms capable of syntrophic metabolism
Michael J. McInerney et al.
INCREDIBLE ANAEROBES: FROM PHYSIOLOGY TO GENOMICS TO FUELS (2008)
Rules of Engagement: Interspecies Interactions that Regulate Microbial Communities
Ainslie E. F. Little et al.
ANNUAL REVIEW OF MICROBIOLOGY (2008)
Parallel genomic evolution and metabolic interdependence in an ancient symbiosis
John P. McCutcheon et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Reconstructing the ancestor of Mycobacterium leprae:: The dynamics of gene loss and genome reduction
Laura Gomez-Valero et al.
GENOME RESEARCH (2007)
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
Adam M. Feist et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
Metabolic complementarity and genomics of the dual bacterial symbiosis of sharpshooters
Dongying Wu et al.
PLOS BIOLOGY (2006)
Two routes of metabolic cross-feeding between Bifidobacterium adolescentis and butyrate-producing anaerobes from the human gut
Alvaro Belenguer et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)
Chance and necessity in the evolution of minimal metabolic networks
C Pál et al.
NATURE (2006)
Bacterial genome size reduction by experimental evolution
AI Nilsson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Dynamic flux balance analysis of diauxic growth in Escherichia coli
R Mahadevan et al.
BIOPHYSICAL JOURNAL (2002)
A model for the evolutionary dynamics of cross-feeding polymorphisms in microorganisms
M Doebeli
POPULATION ECOLOGY (2002)
Isolating uncultivable microorganisms in pure culture in a simulated natural environment
T Kaeberlein et al.
SCIENCE (2002)
分享论文
