期刊
BMC PLANT BIOLOGY
卷 18, 期 -, 页码 -出版社
BMC
DOI: 10.1186/s12870-018-1342-1
关键词
Populus; Rab GTPase; Phylogenetic analysis; Co-expression network; Subcellular localization; Salt tolerance
资金
- National Natural Science Foundation of China [31270699]
- Collaborative Innovation Plan of Jiangsu Higher Education
Background: Rab proteins form the largest family of the Ras superfamily of small GTP-binding proteins and regulate intracellular trafficking pathways. However, the function of the Rab proteins in woody species is still an open question. Results: Here, a total of 67 PtRabs were identified in Populus trichocarpa and categorized into eight subfamilies (RabA-RabH). Based on their chromosomal distribution and duplication blocks in the Populus genome, a total of 27 PtRab paralogous pairs were identified and all of them were generated by whole-genome duplication events. Combined the expression correlation and duplication date, the PtRab paralogous pairs that still keeping highly similar expression patterns were generated around the latest large-scale duplication (similar to 13 MYA). The cis-elements and co-expression network of unique expanded PtRabs suggest their potential roles in poplar development and environmental responses. Subcellular localization of PtRabs from each subfamily indicates each subfamily shows a localization pattern similar to what is revealed in Arabidopsis but RabC shows a localization different from their counterparts. Furthermore, we characterized PtRabE1b by overexpressing its constitutively active mutant PtRabE1b(Q74L) in poplar and found that PtRabE1b(Q74L) enhanced the salt tolerance. Conclusions: These findings provide new insights into the functional divergence of PtRabs and resources for genetic engineering resistant breeding in tree species.
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