相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis
Roberta Ghelli et al.
PLANT CELL (2018)
Intron retention as a component of regulated gene expression programs
Aishwarya G. Jacob et al.
HUMAN GENETICS (2017)
Global identification of alternative splicing via comparative analysis of SMRT- and Illumina-based RNA-seq in strawberry
Yongping Li et al.
PLANT JOURNAL (2017)
Histone H3 lysine 36 methylation affects temperature-induced alternative splicing and flowering in plants
A. Pajoro et al.
GENOME BIOLOGY (2017)
SET DOMAIN GROUP 708, a histone H3 lysine 36-specific methyltransferase, controls flowering time in rice (Oryza sativa)
Bing Liu et al.
NEW PHYTOLOGIST (2016)
Cold-dependent alternative splicing of a Jumonji C domain-containing gene MtJMJC5 in Medicago truncatula
Yingfang Shen et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2016)
SplAdder: identification, quantification and testing of alternative splicing events from RNA-Seq data
Andre Kahles et al.
BIOINFORMATICS (2016)
Global intron retention mediated gene regulation during CD4+ T cell activation
Ting Ni et al.
NUCLEIC ACIDS RESEARCH (2016)
Control of embryonic stem cell self-renewal and differentiation via coordinated alternative splicing and translation of YY2
Soroush Tahmasebi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
In-gel NHS-propionate derivatization for histone post-translational modifications analysis in Arabidopsis thaliana
Jiajia Chen et al.
ANALYTICA CHIMICA ACTA (2015)
Genome-wide cataloging and analysis of alternatively spliced genes in cereal crops
Xiang Jia Min et al.
BMC GENOMICS (2015)
Genome-wide analysis of alternative splicing events in Hordeum vulgare: Highlighting retention of intron-based splicing and its possible function through network analysis
Bahman Panahi et al.
FEBS LETTERS (2015)
Unmasking alternative splicing inside Protein-coding exons defines exitrons and their role in proteome plasticity
Yamile Marquez et al.
GENOME RESEARCH (2015)
Functional characterisation of an intron retaining K+ transporter of barley reveals intron-mediated alternate splicing
K. Shahzad et al.
PLANT BIOLOGY (2015)
Degree of Recruitment of DOT1L to MLL-AF9 Defines Level of H3K79 Di- and Tri-methylation on Target Genes and Transformation Potential
Aravinda Kuntimaddi et al.
CELL REPORTS (2015)
The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants
Ying Li et al.
GENOME BIOLOGY (2015)
Genome-wide identification of evolutionarily conserved alternative splicing events in flowering plants
Srikar Chamala et al.
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY (2015)
Widespread intron retention in mammals functionally tunes transcriptomes
Ulrich Braunschweig et al.
GENOME RESEARCH (2014)
BS69/ZMYND11 Reads and Connects Histone H3.3 Lysine 36 Trimethylation-Decorated Chromatin to Regulated Pre-mRNA Processing
Rui Guo et al.
MOLECULAR CELL (2014)
Imaging of Endogenous Messenger RNA Splice Variants in Living Cells Reveals Nuclear Retention of Transcripts Inaccessible to Nonsense-Mediated Decay in Arabidopsis
Janett Goehring et al.
PLANT CELL (2014)
Intron Retention in the 5′UTR of the Novel ZIF2 Transporter Enhances Translation to Promote Zinc Tolerance in Arabidopsis
Estelle Remy et al.
PLOS GENETICS (2014)
Orchestrated Intron Retention Regulates Normal Granulocyte Differentiation
Justin J-L Wong et al.
CELL (2013)
Removal of Retained Introns Regulates Translation in the Rapidly Developing Gametophyte of Marsilea vestita
Thomas C. Boothby et al.
DEVELOPMENTAL CELL (2013)
H3K36 Methylation Is Involved in Promoting Rice Flowering
Pengfei Sui et al.
MOLECULAR PLANT (2013)
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Daehwan Kim et al.
GENOME BIOLOGY (2013)
Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data
Yoshihiro Kawahara et al.
RICE (2013)
Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention
Karen Yap et al.
GENES & DEVELOPMENT (2012)
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for IncRNAs
Hagen Tilgner et al.
GENOME RESEARCH (2012)
Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis
Yamile Marquez et al.
GENOME RESEARCH (2012)
Cytoplasmic Assembly and Selective Nuclear Import of Arabidopsis ARGONAUTE4/siRNA Complexes
Ruiqiang Ye et al.
MOLECULAR CELL (2012)
Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis
Maria Kalyna et al.
NUCLEIC ACIDS RESEARCH (2012)
H3K36 methylation is critical for brassinosteroid-regulated plant growth and development in rice
Pengfei Sui et al.
PLANT JOURNAL (2012)
Epigenetics in Alternative Pre-mRNA Splicing
Reini F. Luco et al.
CELL (2011)
The CW domain, a new histone recognition module in chromatin proteins
Verena Hoppmann et al.
EMBO JOURNAL (2011)
Nonsense-Mediated mRNA Decay Factors, UPF1 and UPF3, Contribute to Plant Defense
Hee-Jeong Jeong et al.
PLANT AND CELL PHYSIOLOGY (2011)
An Importin β Protein Negatively Regulates MicroRNA Activity in Arabidopsis
Wei Wang et al.
PLANT CELL (2011)
Improving RNA-Seq expression estimates by correcting for fragment bias
Adam Roberts et al.
GENOME BIOLOGY (2011)
SDG714 Regulates Specific Gene Expression and Consequently Affects Plant Growth via H3K9 Dimethylation
Bo Ding et al.
JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2010)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
SF2/ASF autoregulation involves multiple layers of post-transcriptional and translational control
Shuying Sun et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)
Regulation of Alternative Splicing by Histone Modifications
Reini F. Luco et al.
SCIENCE (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Differential chromatin marking of introns and expressed exons by H3K36me3
Paulina Kolasinska-Zwierz et al.
NATURE GENETICS (2009)
Transcriptome analysis by strand-specific sequencing of complementary DNA
Dmitri Parkhomchuk et al.
NUCLEIC ACIDS RESEARCH (2009)
Discovery and Annotation of Functional Chromatin Signatures in the Human Genome
Gary Hon et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
Genome-wide analyses of alternative splicing in plants: Opportunities and challenges
W. Brad Barbazuk et al.
GENOME RESEARCH (2008)
Combinatorial patterns of histone acetylations and methylations in the human genome
Zhibin Wang et al.
NATURE GENETICS (2008)
High-resolution profiling of histone methylations in the human genome
Artern Barski et al.
CELL (2007)
AU-rich elements and alternative splicing in the β-catenin 3′ UTR can influence the human β-catenin mRNA stability
Andrea Thiele et al.
EXPERIMENTAL CELL RESEARCH (2006)
Genomewide comparative analysis of alternative splicing in plants
BB Wang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Intron retention is a major phenomenon in alternative splicing in Arabidopsis
H Ner-Gaon et al.
PLANT JOURNAL (2004)
Molecular characterization of the tobacco SET domain protein NtSET1 unravels its role in histone methylation, chromatin binding, and segregation
Y Yu et al.
PLANT JOURNAL (2004)
Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals
G Yeo et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2004)