相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Computational identification of MoRFs in protein sequences
Nawar Malhis et al.
BIOINFORMATICS (2015)
Intrinsically disordered proteins in cellular signalling and regulation
Peter E. Wright et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2015)
From the static interactome to dynamic protein complexes: Three challenges
Chern Han Yong et al.
JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY (2015)
DISOPRED3: precise disordered region predictions with annotated protein-binding activity
David T. Jones et al.
BIOINFORMATICS (2015)
Evolution of protein interactions: From interactomes to interfaces
Jessica Andreani et al.
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS (2014)
Protein-protein interactions and genetic diseases: The interactome
Kasper Lage
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE (2014)
Identifying transcription factor complexes and their roles
Thorsten Will et al.
BIOINFORMATICS (2014)
Prediction of heterotrimeric protein complexes by two-phase learning using neighboring kernels
Peiying Ruan et al.
BMC BIOINFORMATICS (2014)
Detecting temporal protein complexes from dynamic protein-protein interaction networks
Le Ou-Yang et al.
BMC BIOINFORMATICS (2014)
Prioritizing protein complexes implicated in human diseases by network optimization
Yong Chen et al.
BMC SYSTEMS BIOLOGY (2014)
Discovery of small protein complexes from PPI networks with size-specific supervised weighting
Chern Han Yong et al.
BMC SYSTEMS BIOLOGY (2014)
Complex-based analysis of dysregulated cellular processes in cancer
Sriganesh Srihari et al.
BMC SYSTEMS BIOLOGY (2014)
A Proteome-Scale Map of the Human Interactome Network
Thomas Rolland et al.
CELL (2014)
Design and designability of protein-based assemblies
Jian Zhang et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2014)
Loss of BRCA1 impairs centromeric cohesion and triggers chromosomal instability
Aurelie Di Paolo et al.
FASEB JOURNAL (2014)
pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins
Mihaly Varadi et al.
NUCLEIC ACIDS RESEARCH (2014)
A fine-scale dissection of the DNA double-strand break repair machinery and its implications for breast cancer therapy
Chao Liu et al.
NUCLEIC ACIDS RESEARCH (2014)
A comparative analysis of computational approaches and algorithms for protein subcomplex identification
Nazar Zaki et al.
SCIENTIFIC REPORTS (2014)
Protein Flexibility Facilitates Quaternary Structure Assembly and Evolution
Joseph A. Marsh et al.
PLOS BIOLOGY (2014)
ReSAPP: Predicting overlapping protein complexes by merging multiple-sampled partitions of proteins
So Kobiki et al.
JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY (2014)
Systematic tracking of dysregulated modules identifies novel genes in cancer
Sriganesh Srihari et al.
BIOINFORMATICS (2013)
SwarmDock: a server for flexible protein-protein docking
Mieczyslaw Torchala et al.
BIOINFORMATICS (2013)
Identifying conserved protein complexes between species by constructing interolog networks
Phi-Vu Nguyen et al.
BMC BIOINFORMATICS (2013)
Enhancing the utility of Proteomics Signature Profiling (PSP) with Pathway Derived Subnets (PDSs), performance analysis and specialised ontologies
Wilson Wen Bin Goh et al.
BMC GENOMICS (2013)
Protein Complexes Are under Evolutionary Selection to Assemble via Ordered Pathways
Joseph A. Marsh et al.
CELL (2013)
Sampling strategy for protein complex prediction using cluster size frequency
Daisuke Tatsuke et al.
GENE (2013)
Interactome3D: adding structural details to protein networks
Roberto Mosca et al.
NATURE METHODS (2013)
Emerging methods in protein co-evolution
David de Juan et al.
NATURE REVIEWS GENETICS (2013)
The BioGRID interaction database: 2013 update
Andrew Chatr-aryamontri et al.
NUCLEIC ACIDS RESEARCH (2013)
Prediction of Heterodimeric Protein Complexes from Weighted Protein-Protein Interaction Networks Using Novel Features and Kernel Functions
Peiying Ruan et al.
PLOS ONE (2013)
Structure and dynamics of molecular networks: A novel paradigm of drug discovery A comprehensive review
Peter Csermely et al.
PHARMACOLOGY & THERAPEUTICS (2013)
Flexible docking and refinement with a coarse-grained protein model using ATTRACT
Sjoerd de Vries et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2013)
How good is automated protein docking?
Dima Kozakov et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2013)
The Network Organization of Cancer-associated Protein Complexes in Human Tissues
Jing Zhao et al.
SCIENTIFIC REPORTS (2013)
Protein-protein interaction networks: probing disease mechanisms using model systems
Uros Kuzmanov et al.
GENOME MEDICINE (2013)
Protein-Protein Interactions in a Crowded Environment: An Analysis via Cross-Docking Simulations and Evolutionary Information
Anne Lopes et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
A SURVEY OF COMPUTATIONAL METHODS FOR PROTEIN COMPLEX PREDICTION FROM PROTEIN INTERACTION NETWORKS
Sriganesh Srihari et al.
JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY (2013)
The role of miRNAs in complex formation and control
Wilson Wen Bin Goh et al.
BIOINFORMATICS (2012)
MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins
Fatemeh Miri Disfani et al.
BIOINFORMATICS (2012)
Supervised maximum-likelihood weighting of composite protein networks for complex prediction
Chern Han Yong et al.
BMC SYSTEMS BIOLOGY (2012)
A Census of Human Soluble Protein Complexes
Pierre C. Havugimana et al.
CELL (2012)
Probing the diverse landscape of protein flexibility and binding
Joseph A. Marsh et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2012)
Discovery of Protein Complexes with Core-Attachment Structures from Tandem Affinity Purification (TAP) Data
Min Wu et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Proteomics Signature Profiling (PSP): A Novel Contextualization Approach for Cancer Proteomics
Wilson Wen Bin Goh et al.
JOURNAL OF PROTEOME RESEARCH (2012)
Detecting overlapping protein complexes in protein-protein interaction networks
Tamas Nepusz et al.
NATURE METHODS (2012)
The IntAct molecular interaction database in 2012
Samuel Kerrien et al.
NUCLEIC ACIDS RESEARCH (2012)
SLiMPrints: conservation-based discovery of functional motif fingerprints in intrinsically disordered protein regions
Norman E. Davey et al.
NUCLEIC ACIDS RESEARCH (2012)
Probing the Role of Nascent Helicity in p27 Function as a Cell Cycle Regulator
Steve Otieno et al.
PLOS ONE (2012)
Putting the Pieces Together: Integrative Modeling Platform Software for Structure Determination of Macromolecular Assemblies
Daniel Russel et al.
PLOS BIOLOGY (2012)
A Protein Complex Network of Drosophila melanogaster
K. G. Guruharsha et al.
CELL (2011)
Network medicine: a network-based approach to human disease
Albert-Laszlo Barabasi et al.
NATURE REVIEWS GENETICS (2011)
HitPredict: a database of quality assessed protein-protein interactions in nine species
Ashwini Patil et al.
NUCLEIC ACIDS RESEARCH (2011)
Decomposing PPI networks for complex discovery
Guimei Liu et al.
PROTEOME SCIENCE (2011)
Protein complex prediction based on simultaneous protein interaction network
Suk Hoon Jung et al.
BIOINFORMATICS (2010)
Protein complex prediction via verifying and reconstructing the topology of domain-domain interactions
Yosuke Ozawa et al.
BMC BIOINFORMATICS (2010)
Examination of the relationship between essential genes in PPI network and hub proteins in reverse nearest neighbor topology
Kang Ning et al.
BMC BIOINFORMATICS (2010)
MCL-CAw: a refinement of MCL for detecting yeast complexes from weighted PPI networks by incorporating core-attachment structure
Sriganesh Srihari et al.
BMC BIOINFORMATICS (2010)
Computational approaches for detecting protein complexes from protein interaction networks: a survey
Xiaoli Li et al.
BMC GENOMICS (2010)
Toward the dynamic interactome: it's about time
Teresa M. Przytycka et al.
BRIEFINGS IN BIOINFORMATICS (2010)
Hub Promiscuity in Protein-Protein Interaction Networks
Ashwini Patil et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2010)
Are Scoring Functions in Protein-Protein Docking Ready To Predict Interactomes? Clues from a Novel Binding Affinity Benchmark
Panagiotis L. Kastritis et al.
JOURNAL OF PROTEOME RESEARCH (2010)
An Integrated View of Molecular Coevolution in Protein-Protein Interactions
Simon C. Lovell et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
Structural Diversity in Free and Bound States of Intrinsically Disordered Protein Phosphatase 1 Regulators
Joseph A. Marsh et al.
STRUCTURE (2010)
Structure/Function Implications in a Dynamic Complex of the Intrinsically Disordered Sic1 with the Cdc4 Subunit of an SCF Ubiquitin Ligase
Tanja Mittag et al.
STRUCTURE (2010)
Revisiting Date and Party Hubs: Novel Approaches to Role Assignment in Protein Interaction Networks
Sumeet Agarwal et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
Associating Genes and Protein Complexes with Disease via Network Propagation
Oron Vanunu et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
Complex discovery from weighted PPI networks
Guimei Liu et al.
BIOINFORMATICS (2009)
Markov clustering versus affinity propagation for the partitioning of protein interaction graphs
James Vlasblom et al.
BMC BIOINFORMATICS (2009)
A core-attachment based method to detect protein complexes in PPI networks
Min Wu et al.
BMC BIOINFORMATICS (2009)
Improving the Accuracy of an Affinity Prediction Method by Using Statistics on Shape Complementarity between Proteins
Tatsuya Yoshikawa et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2009)
Predicting Protein Complexes from PPI Data: A Core-Attachment Approach
Henry C. M. Leung et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2009)
Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast
Caroline C. Friedel et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2009)
A Complex-based Reconstruction of the Saccharomyces cerevisiae Interactome
Haidong Wang et al.
MOLECULAR & CELLULAR PROTEOMICS (2009)
Literature-curated protein interaction datasets
Michael E. Cusick et al.
NATURE METHODS (2009)
Up-to-date catalogues of yeast protein complexes
Shuye Pu et al.
NUCLEIC ACIDS RESEARCH (2009)
Human Protein Reference Database-2009 update
T. S. Keshava Prasad et al.
NUCLEIC ACIDS RESEARCH (2009)
Prediction of Protein Binding Regions in Disordered Proteins
Balint Meszaros et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
NetworkBLAST: comparative analysis of protein networks
Maxim Kalaev et al.
BIOINFORMATICS (2008)
From pull-down data to protein interaction networks and complexes with biological relevance
Bing Zhang et al.
BIOINFORMATICS (2008)
Increasing the reliability of protein interactomes
Hon Nian Chua et al.
DRUG DISCOVERY TODAY (2008)
Identification of Protein Interaction Partners and Protein-Protein Interaction Sites
Sophie Sacquin-Mora et al.
JOURNAL OF MOLECULAR BIOLOGY (2008)
Estimating the size of the human interactome
Michael P. H. Stumpf et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Principles of flexible protein-protein docking
Nelly Andrusier et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)
Fuzzy complexes: polymorphism and structural disorder in protein-protein interactions
Peter Tompa et al.
TRENDS IN BIOCHEMICAL SCIENCES (2008)
Protein Complex Evolution Does Not Involve Extensive Network Rewiring
Teunis J. P. van Dam et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
USING INDIRECT PROTEIN–PROTEIN INTERACTIONS FOR PROTEIN COMPLEX PREDICTION
HON NIAN CHUA et al.
Journal of Bioinformatics and Computational Biology (2008)
CORUM: the comprehensive resource of mammalian protein complexes
Andreas Ruepp et al.
NUCLEIC ACIDS RESEARCH (2008)
Structural disorder promotes assembly of protein complexes
Hedi Hegyi et al.
BMC STRUCTURAL BIOLOGY (2007)
Mechanism of coupled folding and binding of an intrinsically disordered protein
Kenji Sugase et al.
NATURE (2007)
Exploring genetic interactions and networks with yeast
Charles Boone et al.
NATURE REVIEWS GENETICS (2007)
Revealing static and dynamic modular architecture of the eukaryotic protein interaction network
Kakajan Komurov et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
Identifying functional modules in the physical interactome of Saccharomyces cerevisiae
Shuye Pu et al.
PROTEOMICS (2007)
Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae
Sean R. Collins et al.
MOLECULAR & CELLULAR PROTEOMICS (2007)
A human phenome-interactome network of protein complexes implicated in genetic disorders
Kasper Lage et al.
NATURE BIOTECHNOLOGY (2007)
Identification of conserved protein complexes based on a model of protein network evolution
Eitan Hirsh et al.
BIOINFORMATICS (2007)
MINT: the molecular INTeraction database
Andrew Chatr-aryamontri et al.
NUCLEIC ACIDS RESEARCH (2007)
Relating three-dimensional structures to protein networks provides evolutionary insights
Philip M. Kim et al.
SCIENCE (2006)
Evaluation of clustering algorithms for protein-protein interaction networks
Sylvain Brohee et al.
BMC BIOINFORMATICS (2006)
The worst-case time complexity for generating all maximal cliques and computational experiments
Etsuji Tomita et al.
THEORETICAL COMPUTER SCIENCE (2006)
Analysis of molecular recognition features (MoRFs)
Amrita Mohan et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
Stratus not altocumulus: A new view of the yeast protein interaction network
Nizar N. Batada et al.
PLOS BIOLOGY (2006)
CFinder:: locating cliques and overlapping modules in biological networks
B Adamcsek et al.
BIOINFORMATICS (2006)
Disordered domains and high surface charge confer hubs with the ability to interact with multiple proteins in interaction networks
A Patil et al.
FEBS LETTERS (2006)
Proteome survey reveals modularity of the yeast cell machinery
AC Gavin et al.
NATURE (2006)
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
NJ Krogan et al.
NATURE (2006)
BioGRID: a general repository for interaction datasets
Chris Stark et al.
NUCLEIC ACIDS RESEARCH (2006)
Flexible nets - The roles of intrinsic disorder in protein interaction networks
AK Dunker et al.
FEBS JOURNAL (2005)
Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data
R Sharan et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2005)
Dynamic complex formation during the yeast cell cycle
U de Lichtenberg et al.
SCIENCE (2005)
The concept of synthetic lethality in the context of anticancer therapy
WG Kaelin
NATURE REVIEWS CANCER (2005)
p27 binds cyclin-CDK complexes through a sequential mechanism involving binding-induced protein folding
ER Lacy et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2004)
A map of the interactome network of the metazoan C-elegans
SM Li et al.
SCIENCE (2004)
Evidence for dynamically organized modularity in the yeast protein-protein interaction network
JDJ Han et al.
NATURE (2004)
Protein complex prediction via cost-based clustering
AD King et al.
BIOINFORMATICS (2004)
MIPS: analysis and annotation of proteins from whole genomes
HW Mewes et al.
NUCLEIC ACIDS RESEARCH (2004)
IntAct: an open source molecular interaction database
H Hermjakob et al.
NUCLEIC ACIDS RESEARCH (2004)
A protein interaction map of Drosophila melanogaster
L Giot et al.
SCIENCE (2003)
Protein complexes and functional modules in molecular networks
V Spirin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Conserved pathways within bacteria and yeast as revealed by global protein network alignment
BP Kelley et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
An automated method for finding molecular complexes in large protein interaction networks
GD Bader et al.
BMC BIOINFORMATICS (2003)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
Protein fragment complementation strategies for biochemical network mapping
SW Michnick
CURRENT OPINION IN BIOTECHNOLOGY (2003)
Analyzing yeast protein-protein interaction data obtained from different sources
GD Bader et al.
NATURE BIOTECHNOLOGY (2002)
Comparative assessment of large-scale data sets of protein-protein interactions
C von Mering et al.
NATURE (2002)
An efficient algorithm for large-scale detection of protein families
AJ Enright et al.
NUCLEIC ACIDS RESEARCH (2002)
Functional organization of the yeast proteome by systematic analysis of protein complexes
AC Gavin et al.
NATURE (2002)
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
Y Ho et al.
NATURE (2002)
A comprehensive two-hybrid analysis to explore the yeast protein interactome
T Ito et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
P Uetz et al.
NATURE (2000)
分享论文
