4.7 Review

A guide to large-scale RNA sample preparation

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

Purification and characterisation of dsRNA using ion pair reverse phase chromatography and mass spectrometry

Alison O. Nwokeoji et al.

JOURNAL OF CHROMATOGRAPHY A (2017)

Article Biochemical Research Methods

Separation of small interfering RNA stereoisomers using reversed-phase ion-pairing chromatography

Li Li et al.

JOURNAL OF CHROMATOGRAPHY A (2017)

Article Chemistry, Analytical

Evaluation of size-exclusion chromatography for the analysis of phosphorothioate oligonucleotides

Atsuko Shimoyama et al.

JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS (2017)

Article Chemistry, Multidisciplinary

Polymerase Chain Transcription: Exponential Synthesis of RNA and Modified RNA

Tingjian Chen et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2017)

Article Biochemical Research Methods

Integrated structural biology to unravel molecular mechanisms of protein-RNA recognition

Andreas Schlundt et al.

METHODS (2017)

Review Biochemistry & Molecular Biology

Structural and Biochemical Properties of Novel Self-Cleaving Ribozymes

Ki-Young Lee et al.

MOLECULES (2017)

Article Multidisciplinary Sciences

Cryo-electron microscopy wins chemistry Nobel

Daniel Cressey et al.

NATURE (2017)

Article Biochemistry & Molecular Biology

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

Zhichao Miao et al.

Review Biochemical Research Methods

Synthetic biological approaches for RNA labelling and imaging: design principles and future opportunities

Steven Pauff et al.

CURRENT OPINION IN BIOTECHNOLOGY (2017)

Review Biochemical Research Methods

Engineering and application of polymerases for synthetic genetics

Gillian Houlihan et al.

CURRENT OPINION IN BIOTECHNOLOGY (2017)

Review Biochemical Research Methods

Enzyme-mediated tagging of RNA

Lea Anhaeuser et al.

CURRENT OPINION IN BIOTECHNOLOGY (2017)

Article Biochemistry & Molecular Biology

Mechanistic Debris Generated by Twister Ribozymes

Ronald R. Breaker

ACS CHEMICAL BIOLOGY (2017)

Article Biotechnology & Applied Microbiology

Advances in time course extracellular production of human pre-miR-29b from Rhodovulum sulfidophilum

Patricia Pereira et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2016)

Review Biochemical Research Methods

Affinity approaches in RNAi-based therapeutics purification

Patricia Pereira et al.

JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES (2016)

Article Biochemistry & Molecular Biology

Whither Ribosome Structure and Dynamics Research? (A Perspective)

Joachim Frank

JOURNAL OF MOLECULAR BIOLOGY (2016)

Article Biochemical Research Methods

Characterizing 3D RNA structure by single molecule FRET

James D. Stephenson et al.

METHODS (2016)

Article Biochemical Research Methods

Applications of PLOR in labeling large RNAs at specific sites

Yu Liu et al.

METHODS (2016)

Article Chemistry, Multidisciplinary

Evolution of thermophilic DNA polymerases for the recognition and amplification of C2′-modified DNA

Tingjian Chen et al.

NATURE CHEMISTRY (2016)

Article Multidisciplinary Sciences

NMR detection of intermolecular interaction sites in the dimeric 5'-leader of the HIV-1 genome

Sarah C. Keane et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Review Chemistry, Physical

NMR solution structure determination of large RNA-protein complexes

Deepak Kumar Yadav et al.

PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY (2016)

Review Biophysics

RNA structure through multidimensional chemical mapping

Siqi Tian et al.

QUARTERLY REVIEWS OF BIOPHYSICS (2016)

Review Cell Biology

SAXS studies of RNA: structures, dynamics, and interactions with partners

Yujie Chen et al.

WILEY INTERDISCIPLINARY REVIEWS-RNA (2016)

Review Cell Biology

Bioengineering of noncoding RNAs for research agents and therapeutics

Pui Yan Ho et al.

WILEY INTERDISCIPLINARY REVIEWS-RNA (2016)

Review Biotechnology & Applied Microbiology

Bioengineered non-coding RNA agent (BERA) in action

Zhijian Duan et al.

BIOENGINEERED (2016)

Review Biophysics

Structure and Mechanism of RNA Mimics of Green Fluorescent Protein

Mingxu You et al.

ANNUAL REVIEW OF BIOPHYSICS, VOL 44 (2015)

Review Biochemistry & Molecular Biology

Review toward all RNA structures, concisely

Kevin M. Weeks

BIOPOLYMERS (2015)

Review Biochemistry & Molecular Biology

Catalysts for RNA and DNA modification

Dennis Gillingham et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2015)

Article Biochemistry & Molecular Biology

Rapid NMR screening of RNA secondary structure and binding

Christina Helmling et al.

JOURNAL OF BIOMOLECULAR NMR (2015)

Article Multidisciplinary Sciences

Visualizing transient Watson-Crick-like mispairs in DNA and RNA duplexes

Isaac J. Kimsey et al.

NATURE (2015)

Article Biochemistry & Molecular Biology

New classes of self-cleaving ribozymes revealed by comparative genomics analysis

Zasha Weinberg et al.

NATURE CHEMICAL BIOLOGY (2015)

Article Biochemistry & Molecular Biology

RNA circularization strategies in vivo and in vitro

Sonja Petkovic et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

Metazoan tRNA introns generate stable circular RNAs in vivo

Zhipeng Lu et al.

Review Biochemistry & Molecular Biology

Hierarchy of RNA Functional Dynamics

Anthony M. Mustoe et al.

ANNUAL REVIEW OF BIOCHEMISTRY, VOL 83 (2014)

Review Biochemistry & Molecular Biology

The Ribosome Emerges from a Black Box

V. Ramakrishnan

Review Biochemistry & Molecular Biology

The Noncoding RNA Revolution-Trashing Old Rules to Forge New Ones

Thomas R. Cech et al.

Article Biochemistry & Molecular Biology

Advances in methods for native expression and purification of RNA for structural studies

Robert T. Batey

CURRENT OPINION IN STRUCTURAL BIOLOGY (2014)

Review Biochemical Research Methods

Ribonucleic acid purification

R. Martins et al.

JOURNAL OF CHROMATOGRAPHY A (2014)

Article Chemistry, Organic

Synthesis and Biophysical Properties of C5-Functionalized LNA (Locked Nucleic Acid)

Pawan Kumar et al.

JOURNAL OF ORGANIC CHEMISTRY (2014)

Article Biochemistry & Molecular Biology

A widespread self-cleaving ribozyme class is revealed by bioinformatics

Adam Roth et al.

NATURE CHEMICAL BIOLOGY (2014)

Review Biochemistry & Molecular Biology

RNA synthesis and purification for structural studies

Yasar Luqman Ahmed et al.

RNA BIOLOGY (2014)

Review Microbiology

DNA polymerases engineered by directed evolution to incorporate non-standard nucleotides

Roberto Laos et al.

FRONTIERS IN MICROBIOLOGY (2014)

Article Biochemical Research Methods

Single-nucleotide resolution of RNAs up to 59 nucleotides by high-performance liquid chromatography

Zhen Huang et al.

ANALYTICAL BIOCHEMISTRY (2013)

Article Biochemistry & Molecular Biology

Mechanism of RNA 2',3'-cyclic phosphate end healing by T4 polynucleotide kinase-phosphatase

Ushati Das et al.

NUCLEIC ACIDS RESEARCH (2013)

Review Biochemical Research Methods

Chromatographic methods for the determination of therapeutic oligonucleotides

A. Cary McGinnis et al.

JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES (2012)

Article Chemistry, Multidisciplinary

Synthesis of (6-13C)Pyrimidine Nucleotides as Spin-Labels for RNA Dynamics

Christoph H. Wunderlich et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2012)

Article Multidisciplinary Sciences

A short adaptive path from DNA to RNA polymerases

Christopher Cozens et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Ultraviolet Shadowing of RNA Can Cause Significant Chemical Damage in Seconds

Wipapat Kladwang et al.

SCIENTIFIC REPORTS (2012)

Article Biochemistry & Molecular Biology

A brief review of DNA and RNA chemical synthesis

Marvin H. Caruthers

BIOCHEMICAL SOCIETY TRANSACTIONS (2011)

Review Chemistry, Multidisciplinary

The oligodeoxynucleotide probes for the site-specific modification of RNA

Shigeki Sasaki et al.

CHEMICAL SOCIETY REVIEWS (2011)

Article Chemistry, Multidisciplinary

Streamlined Process for the Chemical Synthesis of RNA Using 2′-O-Thionocarbamate-Protected Nucleoside Phosphoramidites in the Solid Phase

Douglas J. Dellinger et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2011)

Article Biochemical Research Methods

Large scale expression and purification of recombinant RNA in Escherichia coli

Luc Ponchon et al.

METHODS (2011)

Review Biochemical Research Methods

RNA labeling, conjugation and ligation

Eduardo Paredes et al.

METHODS (2011)

Review Chemistry, Physical

Structure determination and dynamics of protein-RNA complexes by NMR spectroscopy

Cyril Dominguez et al.

PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY (2011)

Article Biochemistry & Molecular Biology

Isotope labeling strategies for NMR studies of RNA

Kun Lu et al.

JOURNAL OF BIOMOLECULAR NMR (2010)

Article Cell Biology

RNA Reactions One Molecule at a Time

Ignacio Tinoco et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2010)

Article Biochemical Research Methods

Reversed-phase ion-pair liquid chromatography analysis and purification of small interfering RNA

Sean M. McCarthy et al.

ANALYTICAL BIOCHEMISTRY (2009)

Article Biochemistry & Molecular Biology

Engineered 5S ribosomal RNAs displaying aptamers recognizing vascular endothelial growth factor and malachite green

Xing Zhang et al.

JOURNAL OF MOLECULAR RECOGNITION (2009)

Article Multidisciplinary Sciences

Architecture and secondary structure of an entire HIV-1 RNA genome

Joseph M. Watts et al.

NATURE (2009)

Review Biochemical Research Methods

Crystallographic studies of DNA and RNA

Blaine H. M. Mooers

METHODS (2009)

Article Biochemical Research Methods

Isothermal titration calorimetry of RNA

Nilshad N. Salim et al.

METHODS (2009)

Review Biochemistry & Molecular Biology

Key labeling technologies to tackle sizeable problems in RNA structural biology

Kwaku T. Dayie

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2008)

Article Biochemistry & Molecular Biology

Improved native affinity purification of RNA

Robert T. Batey et al.

Article Biochemical Research Methods

Recombinant RNA technology: the tRNA scaffold

Luc Ponchon et al.

NATURE METHODS (2007)

Article Biochemical Research Methods

Purification and characterization of transcribed RNAs using gel filtration chromatography

Sean A. McKenna et al.

NATURE PROTOCOLS (2007)

Review Biochemical Research Methods

Electrophoretic mobility shift assay (EMSA) for detecting protein-nucleic acid interactions

Lance M. Hellman et al.

NATURE PROTOCOLS (2007)

Article Biochemistry & Molecular Biology

Dimethyl sulfoxide targets phage RNA polymerases to promote transcription

ZQ Chen et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2005)

Article Biochemistry & Molecular Biology

Site-specific labeling of the ribosome for single-molecule spectroscopy

M Dorywalska et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

Large-scale preparation and purification of polyacrylamide-free RNA oligonucleotides

PJ Lukavsky et al.

Article Biochemical Research Methods

RNA affinity tags for purification of RNAs and ribonucleoprotein complexes

C Srisawat et al.

METHODS (2002)