相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Disparity, diversity, and duplications in the Caryophyllales
Stephen A. Smith et al.
NEW PHYTOLOGIST (2018)
The ancestral flower of angiosperms and its early diversification
Herve Sauquet et al.
NATURE COMMUNICATIONS (2017)
A supertree pipeline for summarizing phylogenetic and taxonomic information for millions of species
Benjamin D. Redelings et al.
PEERJ (2017)
Contentious relationships in phylogenomic studies can be driven by a handful of genes
Xing-Xing Shen et al.
NATURE ECOLOGY & EVOLUTION (2017)
Widespread paleopolyploidy, gene tree conflict, and recalcitrant relationships among the carnivorous Caryophyllales
Joseph F. Walker et al.
AMERICAN JOURNAL OF BOTANY (2017)
Automated assembly of a reference taxonomy for phylogenetic data synthesis
Jonathan A. Rees et al.
BIODIVERSITY DATA JOURNAL (2017)
Nuclear phylogenomics of the palm subfamily Arecoideae (Arecaceae)
Jason R. Comer et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2016)
Non-equilibrium dynamics and floral trait interactions shape extant angiosperm diversity
Brian C. O'Meara et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2016)
Phylesystem: a git-based data store for community-curated phylogenetic estimates
Emily Jane McTavish et al.
BIOINFORMATICS (2015)
Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants
Stephen A. Smith et al.
BMC EVOLUTIONARY BIOLOGY (2015)
No substitute for real data: A cautionary note on the use of phylogenies from birth-death polytomy resolvers for downstream comparative analyses
Daniel L. Rabosky
EVOLUTION (2015)
Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing
Ya Yang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Doubtful pathways to cold tolerance in plants
Erika J. Edwards et al.
NATURE (2015)
Confluence, synnovation, and depauperons in plant diversification
Michael J. Donoghue et al.
NEW PHYTOLOGIST (2015)
Nested radiations and the pulse of angiosperm diversification: increased diversification rates often follow whole genome duplications
David C. Tank et al.
NEW PHYTOLOGIST (2015)
A metacalibrated time-tree documents the early rise of flowering plant phylogenetic diversity
Susana Magallon et al.
NEW PHYTOLOGIST (2015)
Synthesis of phylogeny and taxonomy into a comprehensive tree of life
Cody E. Hinchliff et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Orchid phylogenomics and multiple drivers of their extraordinary diversification
Thomas J. Givnish et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2015)
The Fossil Calibration Database-A New Resource for Divergence Dating
Daniel T. Ksepka et al.
SYSTEMATIC BIOLOGY (2015)
Heterogeneous Rates of Molecular Evolution and Diversification Could Explain the Triassic Age Estimate for Angiosperms
Jeremy M. Beaulieu et al.
SYSTEMATIC BIOLOGY (2015)
PUmPER: phylogenies updated perpetually
Fernando Izquierdo-Carrasco et al.
BIOINFORMATICS (2014)
geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees
Matthew W. Pennell et al.
BIOINFORMATICS (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Functional distinctiveness of major plant lineages
William K. Cornwell et al.
JOURNAL OF ECOLOGY (2014)
Orthology Inference in Nonmodel Organisms Using Transcriptomes and Low-Coverage Genomes: Improving Accuracy and Matrix Occupancy for Phylogenomics
Ya Yang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Novel Information Theory-Based Measures for Quantifying Incongruence among Phylogenetic Trees
Leonidas Salichos et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Three keys to the radiation of angiosperms into freezing environments
Amy E. Zanne et al.
NATURE (2014)
Some Limitations of Public Sequence Data for Phylogenetic Inference (in Plants)
Cody E. Hinchliff et al.
PLOS ONE (2014)
Phylotranscriptomic analysis of the origin and early diversification of land plants
Norman J. Wickett et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Building the Coleoptera tree-of-life for >8000 species: composition of public DNA data and fit with Linnaean classification
Ladislav Bocak et al.
SYSTEMATIC ENTOMOLOGY (2014)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation
Daniel L. Rabosky et al.
NATURE COMMUNICATIONS (2013)
Congruification: support for time scaling large phylogenetic trees
Jonathan M. Eastman et al.
METHODS IN ECOLOGY AND EVOLUTION (2013)
Analyzing and Synthesizing Phylogenies Using Tree Alignment Graphs
Stephen A. Smith et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
treePL: divergence time estimation using penalized likelihood for large phylogenies
Stephen A. Smith et al.
BIOINFORMATICS (2012)
Synthesizing phylogenetic knowledge for ecological research
Jeremy M. Beaulieu et al.
ECOLOGY (2012)
The global diversity of birds in space and time
W. Jetz et al.
NATURE (2012)
UNDERSTANDING ANGIOSPERM DIVERSIFICATION USING SMALL AND LARGE PHYLOGENETIC TREES
Stephen A. Smith et al.
AMERICAN JOURNAL OF BOTANY (2011)
ANGIOSPERM PHYLOGENY: 17 GENES, 640 TAXA
Douglas E. Soltis et al.
AMERICAN JOURNAL OF BOTANY (2011)
Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood
Simon A. Berger et al.
SYSTEMATIC BIOLOGY (2011)
A simple polytomy resolver for dated phylogenies
Tyler S. Kuhn et al.
METHODS IN ECOLOGY AND EVOLUTION (2011)
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
Frederick A. Matsen et al.
BMC BIOINFORMATICS (2010)
Phylogenetic analyses reveal the shady history of C4 grasses
Erika J. Edwards et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Species Selection Maintains Self-Incompatibility
Emma E. Goldberg et al.
SCIENCE (2010)
The Origins of C4 Grasslands: Integrating Evolutionary and Ecosystem Science
Erika J. Edwards et al.
SCIENCE (2010)
Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches
Stephen A. Smith et al.
BMC EVOLUTIONARY BIOLOGY (2009)
Phylogenetic analysis of 73 060 taxa corroborates major eukaryotic groups
Pablo A. Goloboff et al.
CLADISTICS (2009)
Life history influences rates of climatic niche evolution in flowering plants
Stephen A. Smith et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2009)
Phylogenetic signal in the eukaryotic tree of life
Michael J. Sanderson
SCIENCE (2008)
Rates of molecular evolution are linked to life history in flowering plants
Stephen A. Smith et al.
SCIENCE (2008)
The PhyLoTA browser: Processing GenBank for molecular phylogenetics research
Michael J. Sanderson et al.
SYSTEMATIC BIOLOGY (2008)
GEIGER: investigating evolutionary radiations
Luke J. Harmon et al.
BIOINFORMATICS (2008)
TimeTree: a public knowledge-base of divergence times among organisms
S. Blair Hedges et al.
BIOINFORMATICS (2006)
Phylogenetic supermatrix analysis of GenBank sequences from 2228 papilionoid legumes
Michelle M. McMahon et al.
SYSTEMATIC BIOLOGY (2006)
Prospects for building the tree of life from large sequence databases
AC Driskell et al.
SCIENCE (2004)
Estimating absolute rates of molecular evolution and divergence times: A penalized likelihood approach
MJ Sanderson
MOLECULAR BIOLOGY AND EVOLUTION (2002)
Seed plant phylogeny: Demise of the anthophyte hypothesis?
MJ Donoghue et al.
CURRENT BIOLOGY (2000)