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Neha J. Varghese et al.
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Jennifer Shepherd et al.
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Rochelle M. Soo et al.
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Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
H. Bjorn Nielsen et al.
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Sequencing depth and coverage: key considerations in genomic analyses
David Sims et al.
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Pablo Yarza et al.
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IMG/M 4 version of the integrated metagenome comparative analysis system
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RefSeq microbial genomes database: new representation and annotation strategy
Tatiana Tatusova et al.
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Pfam: the protein families database
Robert D. Finn et al.
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Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project
Nikos C. Kyrpides et al.
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The Sequence Read Archive
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Morgan N. Price et al.
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A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
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Database resources of the National Center for Biotechnology Information (vol 37, pg D5, 2008)
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Genome Project Standards in a New Era of Sequencing
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ARB:: a software environment for sequence data
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