相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Orthonome - a new pipeline for predicting high quality orthologue gene sets applicable to complete and draft genomes
Rahul V. Rane et al.
BMC GENOMICS (2017)
ORCAN-a web-based meta-server for real-time detection and functional annotation of orthologs
Andrzej Zielezinski et al.
BIOINFORMATICS (2017)
Orthograph: a versatile tool for mapping coding nucleotide sequences to clusters of orthologous genes
Malte Petersen et al.
BMC BIOINFORMATICS (2017)
Ortholog-Finder: A Tool for Constructing an Ortholog Data Set
Tokumasa Horiike et al.
GENOME BIOLOGY AND EVOLUTION (2016)
BPGA- an ultra-fast pan-genome analysis pipeline
Narendrakumar M. Chaudhari et al.
SCIENTIFIC REPORTS (2016)
The real cost of sequencing: scaling computation to keep pace with data generation
Paul Muir et al.
GENOME BIOLOGY (2016)
Domain similarity based orthology detection
Tristan Bitard-Feildel et al.
BMC BIOINFORMATICS (2015)
PhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modifications
Rima Chaudhuri et al.
BMC GENOMICS (2015)
Ten years of pan-genome analyses
George Vernikos et al.
CURRENT OPINION IN MICROBIOLOGY (2015)
OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species
Yi Wang et al.
NUCLEIC ACIDS RESEARCH (2015)
Integrating Sequence Evolution into Probabilistic Orthology Analysis
Ikram Ullah et al.
SYSTEMATIC BIOLOGY (2015)
A Brief Review of Software Tools for Pangenomics
Jingfa Xiao et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2015)
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
David M. Emms et al.
GENOME BIOLOGY (2015)
orthAgogue: an agile tool for the rapid prediction of orthology relations
Ole Kristian Ekseth et al.
BIOINFORMATICS (2014)
morFeus: a web-based program to detect remotely conserved orthologs using symmetrical best hits and orthology network scoring
Ines Wagner et al.
BMC BIOINFORMATICS (2014)
SPOCS: software for predicting and visualizing orthology/paralogy relationships among genomes
Darren S. Curtis et al.
BIOINFORMATICS (2013)
Hieranoid: Hierarchical Orthology Inference
Fabian Schreiber et al.
JOURNAL OF MOLECULAR BIOLOGY (2013)
PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related species
Derrick E. Fouts et al.
NUCLEIC ACIDS RESEARCH (2012)
ReMark: an automatic program for clustering orthologs flexibly combining a Recursive and a Markov clustering algorithms
Kangseok Kim et al.
BIOINFORMATICS (2011)
OrthoInspector: comprehensive orthology analysis and visual exploration
Benjamin Linard et al.
BMC BIOINFORMATICS (2011)
Proteinortho: Detection of (Co-)orthologs in large-scale analysis
Marcus Lechner et al.
BMC BIOINFORMATICS (2011)
Computational methods for Gene Orthology inference
David M. Kristensen et al.
BRIEFINGS IN BIOINFORMATICS (2011)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
DODO: an efficient orthologous genes assignment tool based on domain architectures. Domain based ortholog detection
Ting-wen Chen et al.
BMC BIOINFORMATICS (2010)
Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118
Maite Novo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods
Adrian M. Altenhoff et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
The quest for orthologs: finding the corresponding gene across genomes
Arnold Kuzniar et al.
TRENDS IN GENETICS (2008)
Assessing Performance of Orthology Detection Strategies Applied to Eukaryotic Genomes
Feng Chen et al.
PLOS ONE (2007)
Kalign - an accurate and fast multiple sequence alignment algorithm
T Lassmann et al.
BMC BIOINFORMATICS (2005)
Protein homology detection by HMM-HMM comparison
J Söding
BIOINFORMATICS (2005)
Inparanoid: a comprehensive database of eukaryotic orthologs
KP O'Brien et al.
NUCLEIC ACIDS RESEARCH (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
L Li et al.
GENOME RESEARCH (2003)
分享论文
