4.2 Article

Implications of short time scale dynamics on long time processes

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Correction Chemistry, Medicinal

A Toolkit to Fit Nonbonded Parameters from and for Condensed Phase Simulations (vol 56, pg 1479, 2016)

Florent Hedin et al.

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2017)

Article Chemistry, Physical

How Rhodopsin Tunes the Equilibrium between Protonated and Deprotonated Forms of the Retinal Chromophore

Sin C. van Keulen et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2017)

Article Chemistry, Physical

Quantifying Biomolecular Recognition with Site-Specific 2D Infrared Probes

Philip J. M. Johnson et al.

JOURNAL OF PHYSICAL CHEMISTRY LETTERS (2017)

Article Multidisciplinary Sciences

Time-resolved observation of protein allosteric communication

Sebastian Buchenberg et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Multidisciplinary Sciences

Entropy redistribution controls allostery in a metalloregulatory protein

Daiana A. Capdevila et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Chemistry, Physical

OH-Stretching Overtone Induced Dynamics in HSO3F from Reactive Molecular Dynamics Simulations

Sebastian Brickel et al.

JOURNAL OF PHYSICAL CHEMISTRY A (2017)

Article Chemistry, Multidisciplinary

Structural Interpretation of Metastable States in Myoglobin-NO

Maksym Soloviov et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2016)

Article Biochemistry & Molecular Biology

Extending Halogen-based Medicinal Chemistry to Proteins IODO-INSULIN AS A CASE STUDY

Krystel El Hage et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2016)

Article Chemistry, Medicinal

A Toolkit to Fit Nonbonded Parameters from and for Condensed Phase Simulations

Florent Hedin et al.

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2016)

Article Chemistry, Physical

Impact of Quadrupolar Electrostatics on Atoms Adjacent to the Sigma-Hole in Condensed-Phase Simulations

Krystel El Hage et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2016)

Article Chemistry, Multidisciplinary

Sequential Proton Coupled Electron Transfer (PCET): Dynamics Observed over 8 Orders of Magnitude in Time

Luke MacAleese et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2016)

Article Chemistry, Physical

HSO3Cl: a prototype molecule for studying OH-stretching overtone induced photodissociation

Juvenal Yosa Reyes et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2016)

Article Chemistry, Physical

Ligand and interfacial dynamics in a homodimeric hemoglobin

Prashant Kumar Gupta et al.

STRUCTURAL DYNAMICS-US (2016)

Article Biochemistry & Molecular Biology

Coupled protein-ligand dynamics in truncated hemoglobin N from atomistic simulations and transition networks

Pierre-Andre Cazade et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (2015)

Article Biochemistry & Molecular Biology

Allostery without a conformational change? Revisiting the paradigm

Ruth Nussinov et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2015)

Article Chemistry, Physical

A comparative analysis of clustering algorithms: O2 migration in truncated hemoglobin I from transition networks

Pierre-Andre Cazade et al.

JOURNAL OF CHEMICAL PHYSICS (2015)

Article Chemistry, Physical

Hierarchical Biomolecular Dynamics: Picosecond Hydrogen Bonding Regulates Microsecond Conformational Transitions

Sebastian Buchenberg et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2015)

Article Multidisciplinary Sciences

Tryptophan-to-heme electron transfer in ferrous myoglobins

Roberto Monni et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Multidisciplinary Sciences

NO binding kinetics in myoglobin investigated by picosecond Fe K-edge absorption spectroscopy

Mahsa Silatani et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Chemistry, Multidisciplinary

Could the Janus-like Properties of the Halobenzene CX Bond (X=Cl, Br) Be Leveraged to Enhance Molecular Recognition?

Krystel El Hage et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2015)

Article Chemistry, Physical

Effect of viscogens on the kinetic response of a photoperturbed allosteric protein

Steven A. Waldauer et al.

JOURNAL OF CHEMICAL PHYSICS (2014)

Article Chemistry, Physical

Generalized QM/MM Force Matching Approach Applied to the 11-cis Protonated Schiff Base Chromophore of Rhodopsin

Manuel Doemer et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2014)

Article Chemistry, Physical

Multisurface Adiabatic Reactive Molecular Dynamics

Tibor Nagy et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2014)

Article Chemistry, Physical

Excitation of Biomolecules with Incoherent Light: Quantum Yield for the Photoisomerization of Model Retinal

T. V. Tscherbul et al.

JOURNAL OF PHYSICAL CHEMISTRY A (2014)

Article Chemistry, Physical

Long-Range Conformational Transition of a Photoswitchable Allosteric Protein: Molecular Dynamics Simulation Study

Sebastian Buchenberg et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2014)

Article Chemistry, Multidisciplinary

Origin of the Spectral Shifts among the Early Intermediates of the Rhodopsin Photocycle

Pablo Campomanes et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2014)

Article Chemistry, Physical

Red-light initiated atmospheric reactions of vibrationally excited molecules

V. Vaida et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2014)

Article Chemistry, Physical

Competitive reaction pathways in vibrationally induced photodissociation of H2SO4

Juvenal Yosa Reyes et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2014)

Article Multidisciplinary Sciences

Electrostatics, hydration, and proton transfer dynamics in the membrane domain of respiratory complex I

Ville R. I. Kaila et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

Vibrationally Promoted Dissociation of Water on Ni(111)

P. Morten Hundt et al.

SCIENCE (2014)

Article Biochemical Research Methods

A Unified View of How Allostery Works

Chung-Jung Tsai et al.

PLOS COMPUTATIONAL BIOLOGY (2014)

Article Biochemical Research Methods

Protein Surface Softness Is the Origin of Enzyme Cold-Adaptation of Trypsin

Geir Villy Isaksen et al.

PLOS COMPUTATIONAL BIOLOGY (2014)

Review Biophysics

Entropy-Enthalpy Compensation: Role and Ramifications in Biomolecular Ligand Recognition and Design

John D. Chodera et al.

ANNUAL REVIEW OF BIOPHYSICS, VOL 42 (2013)

Article Chemistry, Multidisciplinary

Reaction-Pathway Selection in the Structural Dynamics of a Heme Protein

Karin Nienhaus et al.

CHEMISTRY-A EUROPEAN JOURNAL (2013)

Article Chemistry, Physical

Communication: One-photon phase control of cis-trans isomerization in retinal

Carlos A. Arango et al.

JOURNAL OF CHEMICAL PHYSICS (2013)

Article Chemistry, Physical

Rhodopsin Absorption from First Principles: Bypassing Common Pitfalls

Omar Valsson et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2013)

Article Chemistry, Physical

Leveraging Symmetries of Static Atomic Multipole Electrostatics in Molecular Dynamics Simulations

Tristan Bereau et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2013)

Article Multidisciplinary Sciences

Kinetic response of a photoperturbed allosteric protein

Brigitte Buchli et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Ultrafast Tryptophan-to-Heme Electron Transfer in Myoglobins Revealed by UV 2D Spectroscopy

Cristina Consani et al.

SCIENCE (2013)

Article Multidisciplinary Sciences

Real-time observation of the charge transfer to solvent dynamics

Fabrizio Messina et al.

NATURE COMMUNICATIONS (2013)

Article Chemistry, Physical

Oxygen Migration Pathways in NO-bound Truncated Hemoglobin

Pierre-Andre Cazade et al.

CHEMPHYSCHEM (2012)

Article Chemistry, Physical

Temperature Dependence of the Heat Diffusivity of Proteins

Jan Helbing et al.

JOURNAL OF PHYSICAL CHEMISTRY A (2012)

Article Chemistry, Physical

Ligand Binding Studied by 2D IR Spectroscopy Using the Azidohomoalanine Label

Robbert Bloem et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2012)

Article Multidisciplinary Sciences

Stabilized G protein binding site in the structure of constitutively active metarhodopsin-II

Xavier Deupi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Instruments & Instrumentation

Femtosecond pump/supercontinuum-probe setup with 20 kHz repetition rate

Gerald Auboeck et al.

REVIEW OF SCIENTIFIC INSTRUMENTS (2012)

Article Biochemical Research Methods

Accurate Prediction of the Dynamical Changes within the Second PDZ Domain of PTP1e

Elisa Cilia et al.

PLOS COMPUTATIONAL BIOLOGY (2012)

Article Biophysics

Steric and Electronic Influences on the Torsional Energy Landscape of Retinal

Blake Mertz et al.

BIOPHYSICAL JOURNAL (2011)

Review Chemistry, Multidisciplinary

Azobenzene photoswitches for biomolecules

Andrew A. Beharry et al.

CHEMICAL SOCIETY REVIEWS (2011)

Article Chemistry, Physical

Vibrationally Induced Dissociation of Sulfuric Acid (H2SO4)

Juvenal Yosa et al.

JOURNAL OF PHYSICAL CHEMISTRY A (2011)

Article Chemistry, Multidisciplinary

Probing the Transition from Hydrophilic to Hydrophobic Solvation with Atomic Scale Resolution

Van-Thai Pham et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2011)

Article Multidisciplinary Sciences

Crystal structure of metarhodopsin II

Hui-Woog Choe et al.

NATURE (2011)

Article Biochemistry & Molecular Biology

Retinal dynamics underlie its switch from inverse agonist to agonist during rhodopsin activation

Andrey V. Struts et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2011)

Article Optics

Local control theory in trajectory-based nonadiabatic dynamics

Basile F. E. Curchod et al.

PHYSICAL REVIEW A (2011)

Article Biochemical Research Methods

Change in Allosteric Network Affects Binding Affinities of PDZ Domains: Analysis through Perturbation Response Scanning

Z. Nevin Gerek et al.

PLOS COMPUTATIONAL BIOLOGY (2011)

Article Chemistry, Analytical

Halogens in the Troposphere

Barbara J. Finlayson-Pitts

ANALYTICAL CHEMISTRY (2010)

Article Biochemistry & Molecular Biology

Role of Aggregation in Rhodopsin Signal Transduction

Marilisa Neri et al.

BIOCHEMISTRY (2010)

Article Biophysics

Quantitative Analysis of Ligand Migration from Transition Networks

Sabyashachi Mishra et al.

BIOPHYSICAL JOURNAL (2010)

Article Biochemistry & Molecular Biology

Light Activation of Rhodopsin: Insights from Molecular Dynamics Simulations Guided by Solid-State NMR Distance Restraints

Viktor Hornak et al.

JOURNAL OF MOLECULAR BIOLOGY (2010)

Article Multidisciplinary Sciences

Conical intersection dynamics of the primary photoisomerization event in vision

Dario Polli et al.

NATURE (2010)

Article Chemistry, Physical

Local control of multidimensional dynamics

T. J. Penfold et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2010)

Article Chemistry, Physical

Time-resolved photoelectron spectroscopy of solvated electrons in aqueous NaI solution

Andrea Luebcke et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2010)

Article Multidisciplinary Sciences

Protein dynamics investigated by inherent structure analysis

Francesco Rao et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Picosecond primary structural transition of the heme is retarded after nitric oxide binding to heme proteins

Sergei G. Kruglik et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biophysics

Extracting the Causality of Correlated Motions from Molecular Dynamics Simulations

Hiqmet Kamberaj et al.

BIOPHYSICAL JOURNAL (2009)

Article Chemistry, Physical

Dynamics simulations of atmospherically relevant molecular reactions

R. Benny Gerber et al.

INTERNATIONAL REVIEWS IN PHYSICAL CHEMISTRY (2009)

Review Chemistry, Physical

Spectroscopy of Photoreactive Systems: Implications for Atmospheric Chemistry

Veronica Vaida

JOURNAL OF PHYSICAL CHEMISTRY A (2009)

Review Chemistry, Physical

Fundamental and Overtone Vibrational Spectra of Gas-Phase Pyruvic Acid

Kathryn L. Plath et al.

JOURNAL OF PHYSICAL CHEMISTRY A (2009)

Article Chemistry, Multidisciplinary

Structure-Based Approach to the Photocontrol of Protein Folding

Fuzhong Zhang et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2009)

Review Cell Biology

Fine-tuning of GPCR activity by receptor-interacting proteins

Stefanie L. Ritter et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2009)

Article Multidisciplinary Sciences

Mapping the conformational transition in Src activation by cumulating the information from multiple molecular dynamics trajectories

Sichun Yang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

A unified model of protein dynamics

Hans Frauenfelder et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biochemistry & Molecular Biology

Signaling pathways of PDZ2 domain: A molecular dynamics interaction correlation analysis

Yifei Kong et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)

Review Biophysics

The protein folding problem

Ken A. Dill et al.

ANNUAL REVIEW OF BIOPHYSICS (2008)

Review Chemistry, Physical

The ultrafast dynamics of photodetachment

Xiyi Chen et al.

ANNUAL REVIEW OF PHYSICAL CHEMISTRY (2008)

Review Biochemistry & Molecular Biology

Transition networks for modeling the kinetics of conformational change in macromolecules

Frank Noe et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2008)

Review Chemistry, Physical

Sunlight-initiated photochemistry: Excited vibrational states of atmospheric chromophores

Veronica Vaida et al.

INTERNATIONAL JOURNAL OF PHOTOENERGY (2008)

Article Chemistry, Physical

Probability distributions of molecular observables computed from Markov models

Frank Noe

JOURNAL OF CHEMICAL PHYSICS (2008)

Article Chemistry, Physical

Atomistic simulation of adiabatic reactive processes based on multi-state potential energy surfaces

Jonas Danielsson et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2008)

Article Chemistry, Physical

Using Markov models to simulate electron spin resonance spectra from molecular dynamics trajectories

Deniz Sezer et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2008)

Article Chemistry, Physical

Energy transport in peptide helices: A comparison between high- and low-energy excitations

Ellen H. G. Backus et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2008)

Article Chemistry, Multidisciplinary

Mapping of two networks of residues that exhibit structural and dynamical changes upon binding in a PDZ domain protein

Anne Dhulesia et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2008)

Review Biotechnology & Applied Microbiology

Structural diversity of G protein-coupled receptors and significance for drug discovery

Malin C. Lagerstrom et al.

NATURE REVIEWS DRUG DISCOVERY (2008)

Article Multidisciplinary Sciences

Chemical dynamics of vibrationally excited molecules: Controlling reactions in gases and on surfaces

F. Fleming Crim

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

α-Helix folding in the presence of structural constraints

Janne A. Ihalainen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

Two protonation switches control rhodopsin activation in membranes

Mohana Mahalingam et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

Reassessing a sparse energetic network within a single protein domain

Celestine N. Chi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemical Research Methods

Src kinase conformational activation: Thermodynamics, pathways, and mechanisms

Sichun Yang et al.

PLOS COMPUTATIONAL BIOLOGY (2008)

Review Biochemistry & Molecular Biology

Ligand migration and binding in the dimeric hemoglobin of Scapharca inaequivalvis

Karin Nienhaus et al.

BIOCHEMISTRY (2007)

Article Multidisciplinary Sciences

A hierarchy of timescales in protein dynamics is linked to enzyme catalysis

Katherine A. Henzler-Wildman et al.

NATURE (2007)

Article Multidisciplinary Sciences

Light-triggered β-hairpin folding and unfolding

Tobias E. Schrader et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Optics

NOT gate in a cis-trans photoisomerization model

M. Ndong et al.

PHYSICAL REVIEW A (2007)

Article Chemistry, Multidisciplinary

Photoactive peptides for light-initiated tyrosyl radical generation and transport into ribonucleotide reductase

Steven Y. Reece et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)

Article Chemistry, Multidisciplinary

Observation of the solvent shell reorganization around photoexcited atomic solutes by picosecond X-ray absorption spectroscopy

Van-Thai Pham et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)

Article Chemistry, Physical

Femtosecond pump-shaped-dump quantum control of retinal isomerization in bacteriorhodopsin

G. Vogt et al.

CHEMICAL PHYSICS LETTERS (2006)

Article Biochemistry & Molecular Biology

Pump-probe molecular dynamics as a tool for studying protein motion and long range coupling

Kim Sharp et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)

Article Multidisciplinary Sciences

Crystal structure of a photoactivated deprotonated intermediate of rhodopsin

David Salom et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

Allosteric control of cyclic di-GMP signaling

Beat Christen et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2006)

Article Chemistry, Multidisciplinary

Dynamics of vibrational overtone excitations of H2SO4, H2SO4-H2O:: Hydrogen-hopping and photodissociation processes

Yifat Miller et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2006)

Article Multidisciplinary Sciences

Atom-by-atom analysis of global downhill protein folding

Mourad Sadqi et al.

NATURE (2006)

Article Biochemistry & Molecular Biology

Proton movement and photointermediate kinetics in rhodopsin mutants

JW Lewis et al.

BIOCHEMISTRY (2006)

Article Chemistry, Physical

Transition networks for the comprehensive characterization of complex conformational change in proteins

Frank Noe et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2006)

Article Biochemistry & Molecular Biology

Location of Trp265 in metarhodopsin II: Implications for the activation mechanism of the visual receptor rhodopsin

E Crocker et al.

JOURNAL OF MOLECULAR BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Network and graph analyses of folding free energy surfaces

A Caflisch

CURRENT OPINION IN STRUCTURAL BIOLOGY (2006)

Article Chemistry, Multidisciplinary

Crystallographic analysis of primary visual photochemistry

Hitoshi Nakamichi et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2006)

Review Chemistry, Multidisciplinary

Temperature-dependent studies of NO recombination to heme and heme proteins

D Ionascu et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2005)

Article Biochemistry & Molecular Biology

Agonists and partial agonists of rhodopsin:: Retinals with ring modifications

R Vogel et al.

BIOCHEMISTRY (2005)

Article Biochemistry & Molecular Biology

Intramolecular signaling pathways revealed by modeling anisotropic thermal diffusion

N Ota et al.

JOURNAL OF MOLECULAR BIOLOGY (2005)

Article Chemistry, Physical

Extracting Markov models of peptide conformational dynamics from simulation data

V Schultheis et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2005)

Article Biophysics

Functional dynamics of PDZ binding domains: A normal-mode analysis

P De Los Rios et al.

BIOPHYSICAL JOURNAL (2005)

Review Chemistry, Multidisciplinary

Photocontrolling peptide α helices

GA Woolley

ACCOUNTS OF CHEMICAL RESEARCH (2005)

Article Chemistry, Physical

Heat flow in proteins: Computation of thermal transport coefficients

X Yu et al.

JOURNAL OF CHEMICAL PHYSICS (2005)

Review Chemistry, Multidisciplinary

Vibrational energy flow and chemical reactions

M Gruebele et al.

ACCOUNTS OF CHEMICAL RESEARCH (2004)

Review Biochemistry & Molecular Biology

The protein folding 'speed limit'

J Kubelka et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Ligand-dependent dynamics and intramolecular signaling in a PDZ domain

EJ Fuentes et al.

JOURNAL OF MOLECULAR BIOLOGY (2004)

Article Biochemistry & Molecular Biology

The retinal conformation and its environment in rhodopsin in light of a new 2.2 Å crystal structure

T Okada et al.

JOURNAL OF MOLECULAR BIOLOGY (2004)

Article Chemistry, Physical

Folding of the GB1 hairpin peptide from discrete path sampling

DA Evans et al.

JOURNAL OF CHEMICAL PHYSICS (2004)

Article Chemistry, Multidisciplinary

A molecular spring for vision

UF Röhrig et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2004)

Review Biochemistry & Molecular Biology

Is allostery an intrinsic property of all dynamic proteins?

K Gunasekaran et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)

Review Biochemistry & Molecular Biology

Structure of bovine rhodopsin in a trigonal crystal form

J Li et al.

JOURNAL OF MOLECULAR BIOLOGY (2004)

Article Multidisciplinary Sciences

Hidden complexity of free energy surfaces for peptide (protein) folding

SV Krivov et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Chemistry, Physical

Describing protein folding kinetics by molecular dynamics simulations. 1. Theory

WC Swope et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2004)

Article Multidisciplinary Sciences

The ribosome as an entropy trap

A Sievers et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemistry & Molecular Biology

Organization of the G protein-coupled receptors rhodopsin and opsin in native membranes

Y Liang et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2003)

Article Multidisciplinary Sciences

Folding at the speed limit

WY Yang et al.

NATURE (2003)

Article Multidisciplinary Sciences

Photolysis of sulfuric acid vapor by visible solar radiation

V Vaida et al.

SCIENCE (2003)

Article Biochemistry & Molecular Biology

Role of the GGDEF regulator PleD in polar development of Caulobacter crescentus

P Aldridge et al.

MOLECULAR MICROBIOLOGY (2003)

Article Biochemistry & Molecular Biology

Evolutionarily conserved networks of residues mediate allosteric communication in proteins

GM Suel et al.

NATURE STRUCTURAL BIOLOGY (2003)

Review Chemistry, Physical

Discrete path sampling

DJ Wales

MOLECULAR PHYSICS (2002)

Article Geosciences, Multidisciplinary

Near IR photolysis of HO2NO2:: Implications for HOx -: art. no. 1762

RJ Salawitch et al.

GEOPHYSICAL RESEARCH LETTERS (2002)

Article Biochemistry & Molecular Biology

NO rebinding to myoglobin: a reactive molecular dynamics study

M Meuwly et al.

BIOPHYSICAL CHEMISTRY (2002)

Article Biochemistry & Molecular Biology

Wavelength dependent cis-trans isomerization in vision

JE Kim et al.

BIOCHEMISTRY (2001)

Article Biochemistry & Molecular Biology

Entropy-enthalpy compensation: Fact or artifact?

K Sharp

PROTEIN SCIENCE (2001)

Article Biochemistry & Molecular Biology

Structural and thermodynamic aspects of cooperativity in the homodimeric hemoglobin from Scapharca inaequivalvis

E Chiancone et al.

BIOPHYSICAL CHEMISTRY (2000)

Article Multidisciplinary Sciences

Photo-control of helix content in a short peptide

JR Kumita et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)

Letter Chemistry, Physical

Quantum-mechanical modeling of the femtosecond isomerization in rhodopsin

S Hahn et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2000)