4.8 Article

Shifts in coastal sediment oxygenation cause pronounced changes in microbial community composition and associated metabolism

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

Decline in global oceanic oxygen content during the past five decades

Sunke Schmidtko et al.

NATURE (2017)

Article Geochemistry & Geophysics

Geochemical evidence for cryptic sulfur cycling in salt marsh sediments

Jennifer V. Mills et al.

EARTH AND PLANETARY SCIENCE LETTERS (2016)

Article Biotechnology & Applied Microbiology

Microbial Community Composition in the Marine Sediments of Jeju Island: Next-Generation Sequencing Surveys

Heebok Choi et al.

JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY (2016)

Article Biochemistry & Molecular Biology

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Article Microbiology

Disentangling seasonal bacterioplankton population dynamics by high-frequency sampling

Markus V. Lindh et al.

ENVIRONMENTAL MICROBIOLOGY (2015)

Article Biology

Oxygenation of anoxic sediments triggers hatching of zooplankton eggs

Elias Broman et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2015)

Article Multidisciplinary Sciences

Structure and function of the global ocean microbiome

Shinichi Sunagawa et al.

SCIENCE (2015)

Article Biotechnology & Applied Microbiology

DegePrime, a Program for Degenerate Primer Design for Broad-Taxonomic-Range PCR in Microbial Ecology Studies

Luisa W. Hugerth et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)

Article Biochemical Research Methods

Prokka: rapid prokaryotic genome annotation

Torsten Seemann

BIOINFORMATICS (2014)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Microbiology

Microbial consumption of zero-valence sulfur in marine benthic habitats

Petra Pjevac et al.

ENVIRONMENTAL MICROBIOLOGY (2014)

Article Multidisciplinary Sciences

Deoxygenation of the Baltic Sea during the last century

Jacob Carstensen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Biochemistry & Molecular Biology

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

Koichiro Tamura et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemical Research Methods

UPARSE: highly accurate OTU sequences from microbial amplicon reads

Robert C. Edgar

NATURE METHODS (2013)

Article Biochemistry & Molecular Biology

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

Christian Quast et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biotechnology & Applied Microbiology

Comparison of the Levels of Bacterial Diversity in Freshwater, Intertidal Wetland, and Marine Sediments by Using Millions of Illumina Tags

Yu Wang et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)

Article Biochemical Research Methods

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

Evguenia Kopylova et al.

BIOINFORMATICS (2012)

Review Microbiology

Biodiversity, metabolism and applications of acidophilic sulfur-metabolizing microorganisms

Mark Dopson et al.

ENVIRONMENTAL MICROBIOLOGY (2012)

Editorial Material Multidisciplinary Sciences

Save the Baltic Sea

Daniel J. Conley

NATURE (2012)

Article Environmental Sciences

Impact of climate change on the Baltic Sea ecosystem over the past 1,000 years

Karoline Kabel et al.

NATURE CLIMATE CHANGE (2012)

Article Biochemical Research Methods

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Bo Li et al.

BMC BIOINFORMATICS (2011)

Article Microbiology

A metagenomic study of methanotrophic microorganisms in Coal Oil Point seep sediments

Othilde Elise Havelsrud et al.

BMC MICROBIOLOGY (2011)

Article Engineering, Environmental

Hypoxia Is Increasing in the Coastal Zone of the Baltic Sea

Daniel J. Conley et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2011)

Article Biotechnology & Applied Microbiology

16S rRNA-based bacterial diversity in the organic-rich sediments underlying oxygen-deficient waters of the eastern Arabian Sea

Baby Divya et al.

WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY (2011)

Article Biotechnology & Applied Microbiology

Archaeal and Bacterial Communities Respond Differently to Environmental Gradients in Anoxic Sediments of a California Hypersaline Lake, the Salton Sea

Brandon K. Swan et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)

Article Biochemical Research Methods

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Ray: Simultaneous Assembly of Reads from a Mix of High-Throughput Sequencing Technologies

Sebastien Boisvert et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2010)

Article Multidisciplinary Sciences

A Cryptic Sulfur Cycle in Oxygen-Minimum-Zone Waters off the Chilean Coast

Don E. Canfield et al.

SCIENCE (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biotechnology & Applied Microbiology

Extending the models for iron and sulfur oxidation in the extreme Acidophile Acidithiobacillus ferrooxidans

Raquel Quatrini et al.

BMC GENOMICS (2009)

Article Biotechnology & Applied Microbiology

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead et al.

GENOME BIOLOGY (2009)

Article Microbiology

Active bacterial community structure along vertical redox gradients in Baltic Sea sediment

Anna Edlund et al.

ENVIRONMENTAL MICROBIOLOGY (2008)

Review Multidisciplinary Sciences

Spreading dead zones and consequences for marine ecosystems

Robert J. Diaz et al.

SCIENCE (2008)

Article Microbiology

Microbial community structure in polluted Baltic Sea sediments

A Edlund et al.

ENVIRONMENTAL MICROBIOLOGY (2006)

Article Biotechnology & Applied Microbiology

Survey of archaeal diversity reveals an abundance of halophilic Archaea in a low-salt, sulfide- and sulfur-rich spring

MS Elshahed et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)

Article Biochemistry & Molecular Biology

Two distinct heterodisulfide reductase-like enzymes in the sulfate-reducing archaeon Archaeoglobus profundus

GJ Mander et al.

EUROPEAN JOURNAL OF BIOCHEMISTRY (2004)

Article Limnology

Optimization of DNA extraction for quantitative marine bacterioplankton community analysis

KH Boström et al.

LIMNOLOGY AND OCEANOGRAPHY-METHODS (2004)

Article Engineering, Environmental

Hypoxia in the Baltic Sea and basin-scale changes in phosphorus biogeochemistry

DJ Conley et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2002)