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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
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Derrick E. Wood et al.
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BayesHammer: Bayesian clustering for error correction in single-cell sequencing
Sergey I. Nikolenko et al.
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Metagenomic species profiling using universal phylogenetic marker genes
Shinichi Sunagawa et al.
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A comparative evaluation of sequence classification programs
Adam L. Bazinet et al.
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Barbara A. Methe et al.
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The NCBI Taxonomy database
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MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads
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