相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Comparative transcriptome analysis of three color variants of the sea cucumber Apostichopus japonicus
Jihoon Jo et al.
MARINE GENOMICS (2016)
Low coverage sequencing of three echinoderm genomes: the brittle star Ophionereis fasciata, the sea star Patiriella regularis, and the sea cucumber Australostichopus mollis
Kyle A. Long et al.
GIGASCIENCE (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
The EMBL-EBI bioinformatics web and programmatic tools framework
Weizhong Li et al.
NUCLEIC ACIDS RESEARCH (2015)
Repbase Update, a database of repetitive elements in eukaryotic genomes
Weidong Bao et al.
MOBILE DNA (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
Rei Kajitani et al.
GENOME RESEARCH (2014)
Value, Market Preferences and Trade of Beche-De-Mer from Pacific Island Sea Cucumbers
Steven W. Purcell
PLOS ONE (2014)
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Daehwan Kim et al.
GENOME BIOLOGY (2013)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
Transcriptome Sequencing and Characterization for the Sea Cucumber Apostichopus japonicus (Selenka, 1867)
Huixia Du et al.
PLOS ONE (2012)
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
Ruibang Luo et al.
GIGASCIENCE (2012)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
High-Value Components and Bioactives from Sea Cucumbers for Functional Foods-A Review
Sara Bordbar et al.
MARINE DRUGS (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
Sante Gnerre et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Difference in Thermotolerance Between Green and Red Color Variants of the Japanese Sea Cucumber, Apostichopus japonicus Selenka: Hsp70 and Heat-Hardening Effect
Yun-Wei Dong et al.
BIOLOGICAL BULLETIN (2010)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
Mario Stanke et al.
BIOINFORMATICS (2008)
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genornes
Genis Parra et al.
BIOINFORMATICS (2007)
Research article -: The genome of the sea urchin Strongylocentrotus purpuratus
Erica Sodergren et al.
SCIENCE (2006)
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
BJ Haas et al.
NUCLEIC ACIDS RESEARCH (2003)
BLAT - The BLAST-like alignment tool
WJ Kent
GENOME RESEARCH (2002)