4.6 Article

Metagenomic identification of active methanogens and methanotrophs in serpentinite springs of the Voltri Massif Italy

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Donovan H. Parks et al.

GENOME RESEARCH (2015)

Article Multidisciplinary Sciences

Unusual biology across a group comprising more than 15% of domain Bacteria

Christopher T. Brown et al.

NATURE (2015)

Article Multidisciplinary Sciences

Nonequilibrium clumped isotope signals in microbial methane

David T. Wang et al.

SCIENCE (2015)

Article Microbiology

The reduced genomes of Parcubacteria (OD1) contain signatures of a symbiotic lifestyle

William C. Nelson et al.

FRONTIERS IN MICROBIOLOGY (2015)

Article Biochemical Research Methods

HTSeq-a Python framework to work with high-throughput sequencing data

Simon Anders et al.

BIOINFORMATICS (2015)

Article Biochemistry & Molecular Biology

UniProt: a hub for protein information

Alex Bateman et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemical Research Methods

Prokka: rapid prokaryotic genome annotation

Torsten Seemann

BIOINFORMATICS (2014)

Article Biochemical Research Methods

VAMPS: a website for visualization and analysis of microbial population structures

Susan M. Huse et al.

BMC BIOINFORMATICS (2014)

Article Geochemistry & Geophysics

Geochemical evidence for active tropical serpentinization in the Santa Elena Ophiolite, Costa Rica: An analog of a humid early Earth?

Ricardo Sanchez-Murillo et al.

GEOCHEMISTRY GEOPHYSICS GEOSYSTEMS (2014)

Article Biochemistry & Molecular Biology

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

Ron Caspi et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus

Emmanuel Prestat et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Multidisciplinary Sciences

Analysis, Optimization and Verification of Illumina-Generated 16S rRNA Gene Amplicon Surveys

Michael C. Nelson et al.

PLOS ONE (2014)

Article Environmental Sciences

Spatial distribution of microbial communities in the shallow submarine alkaline hydrothermal field of the Prony Bay, New Caledonia

Marianne Quemeneur et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2014)

Article Biochemical Research Methods

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

Paul J. McMurdie et al.

PLOS COMPUTATIONAL BIOLOGY (2014)

Article Multidisciplinary Sciences

PhyloSift: phylogenetic analysis of genomes and metagenomes

Aaron E. Darling et al.

Article Biotechnology & Applied Microbiology

Bacterial Communities Associated with Subsurface Geochemical Processes in Continental Serpentinite Springs

William J. Brazelton et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)

Article Geochemistry & Geophysics

Geochemistry and geobiology of a present-day serpentinization site in California: The Cedars

Penny L. Morrill et al.

GEOCHIMICA ET COSMOCHIMICA ACTA (2013)

Article Multidisciplinary Sciences

Microbial diversity in The Cedars, an ultrabasic, ultrareducing, and low salinity serpentinizing ecosystem

Shino Suzuki et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Review Geochemistry & Geophysics

Serpentinization, Carbon, and Deep Life

Matthew O. Schrenk et al.

CARBON IN EARTH (2013)

Article Biochemical Research Methods

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

Elmar Pruesse et al.

BIOINFORMATICS (2012)

Article Geochemistry & Geophysics

Microbial utilization of abiogenic carbon and hydrogen in a serpentinite-hosted system

Susan Q. Lang et al.

GEOCHIMICA ET COSMOCHIMICA ACTA (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Biochemical Research Methods

Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome

Sahar Abubucker et al.

PLOS COMPUTATIONAL BIOLOGY (2012)

Article Biotechnology & Applied Microbiology

Ray Meta: scalable de novo metagenome assembly and profiling

Sebastien Boisvert et al.

GENOME BIOLOGY (2012)

Article Biochemical Research Methods

UCHIME improves sensitivity and speed of chimera detection

Robert C. Edgar et al.

BIOINFORMATICS (2011)

Article Multidisciplinary Sciences

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

Patrick D. Schloss et al.

PLOS ONE (2011)

Review Microbiology

How to Make a Living by Exhaling Methane

James G. Ferry

ANNUAL REVIEW OF MICROBIOLOGY, VOL 64, 2010 (2010)

Article Biochemical Research Methods

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Prodigal: prokaryotic gene recognition and translation initiation site identification

Doug Hyatt et al.

BMC BIOINFORMATICS (2010)

Article Geochemistry & Geophysics

Elevated concentrations of formate, acetate and dissolved organic carbon found at the Lost City hydrothermal field

Susan Q. Lang et al.

GEOCHIMICA ET COSMOCHIMICA ACTA (2010)

Article Biotechnology & Applied Microbiology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

Patrick D. Schloss et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Review Geochemistry & Geophysics

Extraordinary 13C enrichment of diether lipids at the Lost City Hydrothermal Field indicates a carbon-limited ecosystem

Alexander S. Bradley et al.

GEOCHIMICA ET COSMOCHIMICA ACTA (2009)

Article Ecology

Systematic artifacts in metagenomes from complex microbial communities

Vicente Gomez-Alvarez et al.

ISME JOURNAL (2009)

Article Astronomy & Astrophysics

An alkaline spring system within the Del Puerto Ophiolite (California, USA): A Mars analog site

J. G. Blank et al.

PLANETARY AND SPACE SCIENCE (2009)

Article Biochemical Research Methods

A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes

Yuzhen Ye et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Biotechnology & Applied Microbiology

Community-wide analysis of microbial genome sequence signatures

Gregory J. Dick et al.

GENOME BIOLOGY (2009)

Article Multidisciplinary Sciences

Abiogenic hydrocarbon production at Lost City hydrothermal field

Giora Proskurowski et al.

SCIENCE (2008)

Article Microbiology

Methylosoma difficile gen. nov., sp nov., a novel methanotroph enriched by gradient cultivation from littoral sediment of Lake Constance

Monali Rahalkar et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2007)

Article Biotechnology & Applied Microbiology

Methane- and sulfur-metabolizing microbial communities dominate the Lost City hydrothermal field ecosystem

William J. Brazelton et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)

Article Multidisciplinary Sciences

Microbial diversity in the deep sea and the underexplored rare biosphere

Mitchell L. Sogin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Geochemistry & Geophysics

Experimental investigation of single carbon compounds under hydrothermal conditions

JS Seewald et al.

GEOCHIMICA ET COSMOCHIMICA ACTA (2006)

Article Multidisciplinary Sciences

A serpentinite-hosted ecosystem:: The lost city hydrothermal field

DS Kelley et al.

SCIENCE (2005)

Article Microbiology

Desulfonatronum thiodismutans sp nov., a novel alkaliphilic, sulfate-reducing bacterium capable of lithoautotrophic growth

EV Pikuta et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2003)

Article Biotechnology & Applied Microbiology

Temporal changes in archaeal diversity and chemistry in a mid-ocean ridge subseafloor habitat

JA Huber et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)

Article Geochemistry & Geophysics

A reassessment of the potential for reduction of dissolved CO2 to hydrocarbons during serpentinization of olivine

TM McCollom et al.

GEOCHIMICA ET COSMOCHIMICA ACTA (2001)

Article Multidisciplinary Sciences

An off-axis hydrothermal vent field near the Mid-Atlantic Ridge at 30°N

DS Kelley et al.

NATURE (2001)