期刊
PEERJ
卷 5, 期 -, 页码 -出版社
PEERJ INC
DOI: 10.7717/peerj.4088
关键词
Plant phenotyping; Image analysis; Computer vision; Machine learning; Morphometrics
资金
- Donald Danforth Plant Science Center
- US National Science Foundation [IIA-1430427, IIA-1430428, IIA-1355406, IOS-1202682, MCB-1330562, DBI-1156581]
- US Department of Energy [DE-AR0000594, DE-SC0014395]
- US Department of Agriculture [MOW-2012-01361, 2016-67009-25639]
- U.S. Department of Energy (DOE) [DE-SC0014395] Funding Source: U.S. Department of Energy (DOE)
- NIFA [914331, 2016-67009-25639] Funding Source: Federal RePORTER
- Direct For Biological Sciences
- Div Of Molecular and Cellular Bioscience [1330562] Funding Source: National Science Foundation
- Office of Integrative Activities
- Office Of The Director [1430428] Funding Source: National Science Foundation
- Office Of The Director
- Office of Integrative Activities [1430427] Funding Source: National Science Foundation
Systems for collecting image data in conjunction with computer vision techniques are a powerful tool for increasing the temporal resolution at which plant phenotypes can be measured non-destructively. Computational tools that are flexible and extendable are needed to address the diversity of plant phenotyping problems. We previously described the Plant Computer Vision (PlantCV) software package, which is an image processing toolkit for plant phenotyping analysis. The goal of the PlantCV project is to develop a set of modular, reusable, and repurposable tools for plant image analysis that are open-source and community-developed. Here we present the details and rationale for major developments in the second major release of PlantCV. In addition to overall improvements in the organization of the PlantCV project, new functionality includes a set of new image processing and normalization tools, support for analyzing images that include multiple plants, leaf segmentation, landmark identification tools for morphometrics, and modules for machine learning.
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