4.6 Review

Genome Editing Tools in Plants

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Letter Biochemistry & Molecular Biology

Precise Editing of a Target Base in the Rice Genome Using a Modified CRISPR/Cas9 System

Yuming Lu et al.

MOLECULAR PLANT (2017)

Article Multidisciplinary Sciences

Programmable base editing of A.T to G.C in genomic DNA without DNA cleavage

Nicole M. Gaudelli et al.

NATURE (2017)

Article Biotechnology & Applied Microbiology

Precise base editing in rice, wheat and maize with a Cas9-cytidine deaminase fusion

Yuan Zong et al.

NATURE BIOTECHNOLOGY (2017)

Review Plant Sciences

Systems biology approach in plant abiotic stresses

Tapan Kumar Mohanta et al.

PLANT PHYSIOLOGY AND BIOCHEMISTRY (2017)

Article Multidisciplinary Sciences

Rationally engineered Cas9 nucleases with improved specificity

Ian M. Slaymaker et al.

SCIENCE (2016)

Review Pharmacology & Pharmacy

Tools and applications in synthetic biology

I. Cody MacDonald et al.

ADVANCED DRUG DELIVERY REVIEWS (2016)

Article Multidisciplinary Sciences

High-fidelity CRISPR-Cas9 nucleases with no detectable genome-wide off-target effects

Benjamin P. Kleinstiver et al.

NATURE (2016)

Article Multidisciplinary Sciences

Full transcription of the chloroplast genome in photosynthetic eukaryotes

Chao Shi et al.

SCIENTIFIC REPORTS (2016)

Review Biotechnology & Applied Microbiology

Chloroplast genomes: diversity, evolution, and applications in genetic engineering

Henry Daniell et al.

GENOME BIOLOGY (2016)

Review Biochemistry & Molecular Biology

An overview of pentatricopeptide repeat proteins and their applications

Sam Manna

BIOCHIMIE (2015)

Review Biotechnology & Applied Microbiology

The CRISPR/Cas9 system for plant genome editing and beyond

Luisa Bortesi et al.

BIOTECHNOLOGY ADVANCES (2015)

Article Biochemistry & Molecular Biology

siRNA-directed DNA Methylation in Plants

Meng Xie et al.

CURRENT GENOMICS (2015)

Review Plant Sciences

Genome editing in plants via designed zinc finger nucleases

Joseph F. Petolino

IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-PLANT (2015)

Review Biotechnology & Applied Microbiology

The Ku heterodimer: Function in DNA repair and beyond

Victoria L. Fell et al.

MUTATION RESEARCH-REVIEWS IN MUTATION RESEARCH (2015)

Article Multidisciplinary Sciences

Engineered CRISPR-Cas9 nucleases with altered PAM specificities

Benjamin P. Kleinstiver et al.

NATURE (2015)

Article Biochemistry & Molecular Biology

The many faces of Dicer: the complexity of the mechanisms regulating Dicer gene expression and enzyme activities

Anna Kurzynska-Kokorniak et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biotechnology & Applied Microbiology

RNA-guided transcriptional regulation in planta via synthetic dCas9-based transcription factors

Agnieszka Piatek et al.

PLANT BIOTECHNOLOGY JOURNAL (2015)

Article Biochemistry & Molecular Biology

CRISPR/Cas9-mediated targeted mutagenesis in Nicotiana tabacum

Junping Gao et al.

PLANT MOLECULAR BIOLOGY (2015)

Review Plant Sciences

Pentatricopeptide Repeat Proteins in Plants

Alice Barkan et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 65 (2014)

Article Biochemistry & Molecular Biology

Analysis of off-target effects of CRISPR/Cas-derived RNA-guided endonucleases and nickases

Seung Woo Cho et al.

GENOME RESEARCH (2014)

Article Biochemistry & Molecular Biology

Highly efficient multiplex targeted mutagenesis and genomic structure variation in Bombyx mori cells using CRISPR/Cas9

Yuanyuan Liu et al.

INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY (2014)

Article Biotechnology & Applied Microbiology

Improving CRISPR-Cas nuclease specificity using truncated guide RNAs

Yanfang Fu et al.

NATURE BIOTECHNOLOGY (2014)

Review Biotechnology & Applied Microbiology

CRISPR-Cas systems for editing, regulating and targeting genomes

Jeffry D. Sander et al.

NATURE BIOTECHNOLOGY (2014)

Article Biochemistry & Molecular Biology

Regulation of alternative splicing by local histone modifications: potential roles for RNA-guided mechanisms

Hua-Lin Zhou et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

Large chromosomal deletions and heritable small genetic changes induced by CRISPR/Cas9 in rice

Huanbin Zhou et al.

NUCLEIC ACIDS RESEARCH (2014)

Review Plant Sciences

Synthetic biology in plastids

Lars B. Scharff et al.

PLANT JOURNAL (2014)

Review Biochemistry & Molecular Biology

Artificial microRNA mediated gene silencing in plants: progress and perspectives

Manish Tiwari et al.

PLANT MOLECULAR BIOLOGY (2014)

Article Multidisciplinary Sciences

Targeted Genome Editing of Sweet Orange Using Cas9/sgRNA

Hongge Jia et al.

PLOS ONE (2014)

Article Multidisciplinary Sciences

Multigeneration analysis reveals the inheritance, specificity, and patterns of CRISPR/Cas-induced gene modifications in Arabidopsis

Zhengyan Feng et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Plant Sciences

New biotechnology enhances the application of cisgenesis in plant breeding

Hongwei Hou et al.

Frontiers in Plant Science (2014)

Article Biotechnology & Applied Microbiology

Conserved microRNA editing in mammalian evolution, development and disease

Maria Warnefors et al.

GENOME BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Double Nicking by RNA-Guided CRISPR Cas9 for Enhanced Genome Editing Specificity

F. Ann Ran et al.

Article Biochemistry & Molecular Biology

CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes

Luke A. Gilbert et al.

Letter Cell Biology

Targeted mutagenesis in rice using CRISPR-Cas system

Jin Miao et al.

CELL RESEARCH (2013)

Review Microbiology

Organelle transcriptomes: products of a deconstructed genome

Ian D. Small et al.

CURRENT OPINION IN MICROBIOLOGY (2013)

Article Biochemistry & Molecular Biology

RNA-Guided Genome Editing in Plants Using a CRISPRCas System

Kabin Xie et al.

MOLECULAR PLANT (2013)

Article Biotechnology & Applied Microbiology

Targeted DNA demethylation and activation of endogenous genes using programmable TALE-TET1 fusion proteins

Morgan L. Maeder et al.

NATURE BIOTECHNOLOGY (2013)

Article Biotechnology & Applied Microbiology

CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering

Prashant Mali et al.

NATURE BIOTECHNOLOGY (2013)

Article Biotechnology & Applied Microbiology

DNA targeting specificity of RNA-guided Cas9 nucleases

Patrick D. Hsu et al.

NATURE BIOTECHNOLOGY (2013)

Letter Biotechnology & Applied Microbiology

Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease

Vladimir Nekrasov et al.

NATURE BIOTECHNOLOGY (2013)

Article Biotechnology & Applied Microbiology

High-throughput profiling of off-target DNA cleavage reveals RNA-programmed Cas9 nuclease specificity

Vikram Pattanayak et al.

NATURE BIOTECHNOLOGY (2013)

Article Biotechnology & Applied Microbiology

High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells

Yanfang Fu et al.

NATURE BIOTECHNOLOGY (2013)

Letter Biotechnology & Applied Microbiology

Targeted genome modification of crop plants using a CRISPR-Cas system

Qiwei Shan et al.

NATURE BIOTECHNOLOGY (2013)

Article Biotechnology & Applied Microbiology

RNA-guided editing of bacterial genomes using CRISPR-Cas systems

Wenyan Jiang et al.

NATURE BIOTECHNOLOGY (2013)

Article Biochemical Research Methods

CRISPR RNA-guided activation of endogenous human genes

Morgan L. Maeder et al.

NATURE METHODS (2013)

Article Biochemical Research Methods

Orthogonal Cas9 proteins for RNA-guided gene regulation and editing

Kevin M. Esvelt et al.

NATURE METHODS (2013)

Review Genetics & Heredity

Argonaute proteins: functional insights and emerging roles

Gunter Meister

NATURE REVIEWS GENETICS (2013)

Review Cell Biology

INNOVATION TALENs: a widely applicable technology for targeted genome editing

J. Keith Joung et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Bidirectional processing of pri-miRNAs with branched terminal loops by Arabidopsis Dicer-like1

Hongliang Zhu et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)

Review Biotechnology & Applied Microbiology

Intragenesis and cisgenesis as alternatives to transgenic crop development

Inger Baeksted Holme et al.

PLANT BIOTECHNOLOGY JOURNAL (2013)

Article Multidisciplinary Sciences

Efficient metabolic pathway engineering in transgenic tobacco and tomato plastids with synthetic multigene operons

Yinghong Lu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

RNA-induced silencing complex (RISC) Proteins PACT, TRBP, and Dicer are SRA binding nuclear receptor coregulators

Andrew D. Redfern et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Review Biochemistry & Molecular Biology

PPR-SMRs Ancient proteins with enigmatic functions

Sheng Liu et al.

RNA BIOLOGY (2013)

Article Multidisciplinary Sciences

RNA-Guided Human Genome Engineering via Cas9

Prashant Mali et al.

SCIENCE (2013)

Article Multidisciplinary Sciences

Multiplex Genome Engineering Using CRISPR/Cas Systems

Le Cong et al.

SCIENCE (2013)

Article Genetics & Heredity

RNA-Guided Genome Editing for Target Gene Mutations in Wheat

Santosh Kumar Upadhyay et al.

G3-GENES GENOMES GENETICS (2013)

Review Biotechnology & Applied Microbiology

Oligonucleotide-directed gene-editing technology: mechanisms and future prospects

Ioannis Papaioannou et al.

EXPERT OPINION ON BIOLOGICAL THERAPY (2012)

Letter Biotechnology & Applied Microbiology

High-efficiency TALEN-based gene editing produces disease-resistant rice

Ting Li et al.

NATURE BIOTECHNOLOGY (2012)

Article Biochemical Research Methods

An optimized two-finger archive for ZFN-mediated gene targeting

Ankit Gupta et al.

NATURE METHODS (2012)

Article Multidisciplinary Sciences

Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria

Giedrius Gasiunas et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity

Martin Jinek et al.

SCIENCE (2012)

Review Cell Biology

Apolipoprotein B mRNA-editing, catalytic polypeptide cytidine deaminases and retroviral restriction

Atsushi Koito et al.

WILEY INTERDISCIPLINARY REVIEWS-RNA (2012)

Review Medicine, Research & Experimental

Targeting DNA With Fingers and TALENs

Daniel F. Carlson et al.

MOLECULAR THERAPY-NUCLEIC ACIDS (2012)

Article Genetics & Heredity

Kinetic analysis of DNA double-strand break repair pathways in Arabidopsis

Cyril Charbonnel et al.

DNA REPAIR (2011)

Review Genetics & Heredity

Genome Engineering With Zinc-Finger Nucleases

Dana Carroll

GENETICS (2011)

Review Biotechnology & Applied Microbiology

TILLING - a shortcut in functional genomics

Marzena Kurowska et al.

JOURNAL OF APPLIED GENETICS (2011)

Article Biotechnology & Applied Microbiology

Induction and repair of DNA double strand breaks: The increasing spectrum of non-homologous end joining pathways

Emil Mladenov et al.

MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS (2011)

Review Cell Biology

PIWI-interacting small RNAs: the vanguard of genome defence

Mikiko C. Siomi et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2011)

Review Plant Sciences

The evolution of RNA editing and pentatricopeptide repeat genes

Sota Fujii et al.

NEW PHYTOLOGIST (2011)

Article Biochemistry & Molecular Biology

Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting

Tomas Cermak et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biotechnology & Applied Microbiology

Gibberellin-associated cisgenes modify growth, stature and wood properties in Populus

Katherine M. Han et al.

PLANT BIOTECHNOLOGY JOURNAL (2011)

Article Plant Sciences

Biolistic co-transformation of the nuclear and plastid genomes

Zouhair Elghabi et al.

PLANT JOURNAL (2011)

Article Multidisciplinary Sciences

Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution

Sota Fujii et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Plastid gene expression and plant development require a plastidic protein of the mitochondrial transcription termination factor family

Elena Babiychuk et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence

Ekaterina Semenova et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Review Plant Sciences

Xanthomonas AvrBs3 Family-Type III Effectors: Discovery and Function

Jens Boch et al.

ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 48 (2010)

Article Multidisciplinary Sciences

Inducible gene expression from the plastid genome by a synthetic riboswitch

Andreas Verhounig et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Review Biochemistry & Molecular Biology

Making RISC

Tomoko Kawamata et al.

TRENDS IN BIOCHEMICAL SCIENCES (2010)

Review Biochemistry & Molecular Biology

The RNA-induced Silencing Complex: A Versatile Gene-silencing Machine

Ashley J. Pratt et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2009)

Article Food Science & Technology

A transgenic durum wheat line that is free of marker genes and expresses 1Dy10

Agata Gadaleta et al.

JOURNAL OF CEREAL SCIENCE (2008)

Article Biochemistry & Molecular Biology

On the expansion of the pentatricopeptide repeat gene family in plants

Nicholas O'Toole et al.

MOLECULAR BIOLOGY AND EVOLUTION (2008)

Review Cell Biology

Argonaute proteins: key players in RNA silencing

Gyorgy Hutvagner et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2008)

News Item Biochemistry & Molecular Biology

Regulation of plastid gene expression in the chloroplast-to-chromoplast transition

Nancy R. Hofmann

PLANT CELL (2008)

Review Plant Sciences

Gene silencing in plants using artificial microRNAs and other small RNAs

Stephan Ossowski et al.

PLANT JOURNAL (2008)

Review Plant Sciences

Pentatricopeptide repeat proteins: a socket set for organelle gene expression

Christian Schmitz-Linneweber et al.

TRENDS IN PLANT SCIENCE (2008)

Review Developmental Biology

Biogenesis and germline functions of piRNAs

Carla Klattenhoff et al.

DEVELOPMENT (2008)

Review Biochemistry & Molecular Biology

The coming of age for Piwi proteins

Anita G. Seto et al.

MOLECULAR CELL (2007)

Article Multidisciplinary Sciences

Conserved domain structure of pentatricopeptide repeat proteins involved in chloroplast RNA editing

Kenji Okuda et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemical Research Methods

A protocol for designing siRNAs with high functionality and specificity

Amanda Birmingham et al.

NATURE PROTOCOLS (2007)

Review Biochemical Research Methods

RNAi for revealing and engineering plant gene functions

Ian Small

CURRENT OPINION IN BIOTECHNOLOGY (2007)

Review Cell Biology

Evolution of plant microRNA gene families

Aili Li et al.

CELL RESEARCH (2007)

Article Biochemistry & Molecular Biology

A two-hit trigger for siRNA biogenesis in plants

Michael J. Axtell et al.

Article Biochemistry & Molecular Biology

Linear molecules of tobacco ptDNA end at known replication origins and additional loci

Lars B. Scharff et al.

PLANT MOLECULAR BIOLOGY (2006)

Review Cell Biology

Mechanism of homologous recombination: mediators and helicases take on regulatory functions

Patrick Sung et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2006)

Article Biochemistry & Molecular Biology

The role of AtMUS81 in DNA repair and its genetic interaction with the helicase AtRecQ4A

F. Hartung et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Plant Sciences

Efficient virus-induced gene silencing in Arabidopsis

Tessa M. Burch-Smith et al.

PLANT PHYSIOLOGY (2006)

Letter Biotechnology & Applied Microbiology

Do cisgenic plants warrant less stringent oversight?

Henk J. Schouten et al.

NATURE BIOTECHNOLOGY (2006)

Article Biochemical Research Methods

A bacterial one-hybrid selection system for interrogating zinc finger-DNA interactions

Sundar Durai et al.

COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING (2006)

Article Plant Sciences

Conservation and divergence of plant microRNA genes

BH Zhang et al.

PLANT JOURNAL (2006)

Review Biochemistry & Molecular Biology

RNA editing in plant organelles: machinery, physiological function and evolution

T Shikanai

CELLULAR AND MOLECULAR LIFE SCIENCES (2006)

Article Biotechnology & Applied Microbiology

Mammalian gene targeting with designed zinc finger nucleases

MH Porteus

MOLECULAR THERAPY (2006)

Article Biotechnology & Applied Microbiology

Custom zinc-finger nucleases for use in human cells

S Alwin et al.

MOLECULAR THERAPY (2005)

Article Biochemistry & Molecular Biology

Design, engineering, and characterization of zinc finger nucleases

M Mani et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2005)

Article Biochemistry & Molecular Biology

Binding of two zinc finger nuclease monomers to two specific sites is required for effective double-strand DNA cleavage

M Mani et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2005)

Article Agronomy

Imidazolinone-tolerant crops: history, current status and future

SY Tan et al.

PEST MANAGEMENT SCIENCE (2005)

Article Biochemistry & Molecular Biology

Zinc finger nucleases: custom-designed molecular scissors for genome engineering of plant and mammalian cells

S Durai et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Multidisciplinary Sciences

Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions

Y Kurihara et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Plant Sciences

TILLING. Traditional mutagenesis meets functional genomics

S Henikoff et al.

PLANT PHYSIOLOGY (2004)

Review Microbiology

RNA interference: Biology, mechanism, and applications

N Agrawal et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2003)

Article Biochemical Research Methods

Virus-induced gene silencing in plants

R Lu et al.

METHODS (2003)

Review Multidisciplinary Sciences

Role of microRNAs in plant and animal development

JC Carrington et al.

SCIENCE (2003)

Review Biotechnology & Applied Microbiology

Drug discovery with engineered zinc-finger proteins

AC Jamieson et al.

NATURE REVIEWS DRUG DISCOVERY (2003)

Review Genetics & Heredity

Exploring plant genomes by RNA-induced gene silencing

PM Waterhouse et al.

NATURE REVIEWS GENETICS (2003)

Article Multidisciplinary Sciences

Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus

W Martin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Cell Biology

MicroRNAs in plants

BJ Reinhart et al.

GENES & DEVELOPMENT (2002)

Article Biochemistry & Molecular Biology

Validated zinc finger protein designs for all 16 GNN DNA triplet targets

Q Liu et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2002)

Article Biochemistry & Molecular Biology

Gene replacement by homologous recombination in plants

H Puchta

PLANT MOLECULAR BIOLOGY (2002)

Article Biochemistry & Molecular Biology

Insights into the molecular recognition of the 5′-GNN-3′ family of DNA sequences by zinc finger domains

B Dreier et al.

JOURNAL OF MOLECULAR BIOLOGY (2000)