相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison
Michael Richter et al.
BIOINFORMATICS (2016)
Proteorhodopsin light-enhanced growth linked to vitamin-B1 acquisition in marine Flavobacteria
Laura Gomez-Consarnau et al.
ISME JOURNAL (2016)
In Situ Hydrogen Dynamics in a Hot Spring Microbial Mat during a Diel Cycle
Niels Peter Revsbech et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)
The Origin of Life in Alkaline Hydrothermal Vents
Victor Sojo et al.
ASTROBIOLOGY (2016)
Caldimicrobium thiodismutans sp nov., a sulfur-disproportionating bacterium isolated from a hot spring, and emended description of the genus Caldimicrobium
Hisaya Kojima et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2016)
Characterization and Genome Analysis of the First Facultatively Alkaliphilic Thermodesulfovibrio Isolated from the Deep Terrestrial Subsurface
Yulia A. Frank et al.
FRONTIERS IN MICROBIOLOGY (2016)
The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. I. Microbial Diversity Based on 16S rRNA Gene Amplicons and Metagenomic Sequencing
Vera Thiel et al.
FRONTIERS IN MICROBIOLOGY (2016)
The physiology and habitat of the last universal common ancestor
Madeline C. Weiss et al.
NATURE MICROBIOLOGY (2016)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
Chloracidobacterium thermophilum gen. nov., sp nov.: an anoxygenic microaerophilic chlorophotoheterotrophic acidobacterium
Marcus Tank et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2015)
Characterization of an Unconventional Rhodopsin from the Freshwater Actinobacterium Rhodoluna lacicola
J. L. Keffer et al.
JOURNAL OF BACTERIOLOGY (2015)
Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms
Young-Mo Kim et al.
FRONTIERS IN MICROBIOLOGY (2015)
Microsensor measurements of hydrogen gas dynamics in cyanobacterial microbial mats
Michael Nielsen et al.
FRONTIERS IN MICROBIOLOGY (2015)
The molecular dimension of microbial species: 2. Synechococcus strains representative of putative ecotypes inhabiting different depths in the Mushroom Spring microbial mat exhibit different adaptive and acclimative responses to light
Shane Nowack et al.
FRONTIERS IN MICROBIOLOGY (2015)
The molecular dimension of microbial species: 1. Ecological distinctions among, and homogeneity within, putative ecotypes of Synechococcus inhabiting the cyanobacterial mat of Mushroom Spring, Yellowstone National Park
Eric D. Becraft et al.
FRONTIERS IN MICROBIOLOGY (2015)
Nutrient requirements and growth physiology of the photoheterotrophic Acidobacterium, Chloracidobacterium thermophilum
Marcus Tank et al.
FRONTIERS IN MICROBIOLOGY (2015)
The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
Millie T. Olsen et al.
FRONTIERS IN MICROBIOLOGY (2015)
Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria
Brett J. Baker et al.
MICROBIOME (2015)
Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi) sulfite reductases
Albert Leopold Mueller et al.
ISME Journal (2015)
CDD: NCBI's conserved domain database
Aron Marchler-Bauer et al.
NUCLEIC ACIDS RESEARCH (2015)
Draft Genome Sequence of the Deinococcus-Thermus Bacterium Meiothermus ruber Strain A
Vera Thiel et al.
GENOME ANNOUNCEMENTS (2015)
Genome Sequence of the Sulfate-Reducing Thermophilic Bacterium Thermodesulfovibrio yellowstonii Strain DSM 11347T (Phylum Nitrospirae)
Srijak Bhatnagar et al.
GENOME ANNOUNCEMENTS (2015)
Chemolithotrophic growth of the aerobic hyperthermophilic bacterium Thermocrinis ruber OC 14/7/2 on monothioarsenate and arsenite
Cornelia Haertig et al.
FEMS MICROBIOLOGY ECOLOGY (2014)
AmphoraNet: The webserver implementation of the AMPHORA2 metagenomic workflow suite
Csaba Kerepesi et al.
GENE (2014)
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
Ross Overbeek et al.
NUCLEIC ACIDS RESEARCH (2014)
Cyanobacterial Light-Driven Proton Pump, Gloeobacter Rhodopsin: Complementarity between Rhodopsin-Based Energy Production and Photosynthesis
Ah Reum Choi et al.
PLOS ONE (2014)
Draft Genome Sequence of a Sulfide-Oxidizing, Autotrophic Filamentous Anoxygenic Phototrophic Bacterium, Chloroflexus sp. Strain MS-G (Chloroflexi)
Vera Thiel et al.
GENOME ANNOUNCEMENTS (2014)
Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring
Christian G. Klatt et al.
ISME JOURNAL (2013)
Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage
Jeremy A. Dodsworth et al.
NATURE COMMUNICATIONS (2013)
Community structure and function of high-temperature chlorophototrophic microbial mats inhabiting diverse geothermal environments
Christian G. Klatt et al.
FRONTIERS IN MICROBIOLOGY (2013)
Identification and Distribution of High-Abundance Proteins in the Octopus Spring Microbial Mat Community
Courtney S. Schaffert et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
Complete genome of Candidatus Chloracidobacterium thermophilum, a chlorophyll-based photoheterotroph belonging to the phylum Acidobacteria
Amaya M. Garcia Costas et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
'Candidatus Thermochlorobacter aerophilum': an aerobic chlorophotoheterotrophic member of the phylum Chlorobi defined by metagenomics and metatranscriptomics
Zhenfeng Liu et al.
ISME JOURNAL (2012)
Identification of the Bacteriochlorophylls, Carotenoids, Quinones, Lipids, and Hopanoids of Candidatus Chloracidobacterium thermophilum
Amaya M. Garcia Costas et al.
JOURNAL OF BACTERIOLOGY (2012)
Diversification of Bacterial Community Composition along a Temperature Gradient at a Thermal Spring
R. Craig Everroad et al.
MICROBES AND ENVIRONMENTS (2012)
The Emergence and Early Evolution of Biological Carbon-Fixation
Rogier Braakman et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Widespread occurrence of two carbon fixation pathways in tubeworm endosymbionts: lessons from hydrothermal vent associated tubeworms from the Mediterranean Sea
Vera Thiel et al.
FRONTIERS IN MICROBIOLOGY (2012)
Beyond the Calvin Cycle: Autotrophic Carbon Fixation in the Ocean
Michael Huegler et al.
ANNUAL REVIEW OF MARINE SCIENCE, VOL 3 (2011)
Alternative Pathways of Carbon Dioxide Fixation: Insights into the Early Evolution of Life?
Georg Fuchs
ANNUAL REVIEW OF MICROBIOLOGY, VOL 65 (2011)
Fine-Scale Distribution Patterns of Synechococcus Ecological Diversity in Microbial Mats of Mushroom Spring, Yellowstone National Park
Eric D. Becraft et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Coassimilation of Organic Substrates via the Autotrophic 3-Hydroxypropionate Bi-Cycle in Chloroflexus aurantiacus
Jan Zarzycki et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential
Christian G. Klatt et al.
ISME JOURNAL (2011)
Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat
Zhenfeng Liu et al.
ISME JOURNAL (2011)
CDD: a Conserved Domain Database for the functional annotation of proteins
Aron Marchler-Bauer et al.
NUCLEIC ACIDS RESEARCH (2011)
Carbon metabolic pathways in phototrophic bacteria and their broader evolutionary implications
Kuo-Hsiang Tang et al.
FRONTIERS IN MICROBIOLOGY (2011)
Identification of a Novel Class of Membrane-Bound [NiFe]-Hydrogenases in Thermococcus onnurineus NA1 by In Silico Analysis
Jae Kyu Lim et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)
Cultivation and Genomic, Nutritional, and Lipid Biomarker Characterization of Roseiflexus Strains Closely Related to Predominant In Situ Populations Inhabiting Yellowstone Hot Spring Microbial Mats
Marcel T. J. van der Meer et al.
JOURNAL OF BACTERIOLOGY (2010)
CDD: specific functional annotation with the Conserved Domain Database
Aron Marchler-Bauer et al.
NUCLEIC ACIDS RESEARCH (2009)
The Evolution and Function of Carotenoid Hydroxylases in Arabidopsis
Joonyul Kim et al.
PLANT AND CELL PHYSIOLOGY (2009)
Identifying the missing steps of the autotrophic 3-hydroxypropionate CO2 fixation cycle in Chloroflexus aurantiacus
Jan Zarzycki et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Community-wide analysis of microbial genome sequence signatures
Gregory J. Dick et al.
GENOME BIOLOGY (2009)
Xanthorhodopsin: A bacteriorhodopsin-like proton pump with a carotenoid antenna
Janos K. Lanyi et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2008)
Acetogenesis and the Wood-Ljungdahl pathway of CO2 fixation
Stephen W. Ragsdale et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2008)
The RAST server: Rapid annotations using subsystems technology
Ramy K. Aziz et al.
BMC GENOMICS (2008)
Regulation of nif gene expression and the energetics of N2 fixation over the diel cycle in a hot spring microbial mat
Anne-Soisig Steunou et al.
ISME JOURNAL (2008)
Sulfidogenesis under extremely haloalkaline conditions by Desulfonatronospira thiodismutans gen. nov., sp nov., and Desulfonatronospira delicata sp nov -: a novel lineage of Deltaproteobacteria from hypersaline soda lakes
Dirnitry Yu. Sorokin et al.
MICROBIOLOGY-SGM (2008)
Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses
Devaki Bhaya et al.
ISME JOURNAL (2007)
Comparative genomics provides evidence for the 3-hydroxypropionate autotrophic pathway in filamentous anoxygenic phototrophic bacteria and in hot spring microbial mats
Christian G. Klatt et al.
ENVIRONMENTAL MICROBIOLOGY (2007)
High rates of sulfate reduction in a low-sulfate hot spring microbial mat are driven by a low level of diversity of sulfate-respiring microorganisms
Jesse G. Dillon et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Candidatus Chloracidobacterium thermophilum:: An aerobic phototrophic acidobacterium
Donald A. Bryant et al.
SCIENCE (2007)
The role of Hox hydrogenase in the H2 metabolism of Thiocapsa roseopersicina
Gabor Rakhely et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2007)
Novel enzyme reactions related to the tricarboxylic acid cycle: phylogenetic/functional implications and biotechnological applications
Miho Aoshima
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2007)
Impact of carbon metabolism on 13C signatures of cyanobacteria and green non-sulfur-like bacteria inhabiting a microbial mat from an alkaline siliceous hot spring in Yellowstone National Park (USA)
Marcel T. J. van der Meer et al.
ENVIRONMENTAL MICROBIOLOGY (2007)
Physiological proteomics of the uncultured endosymbiont of Riftia pachyptila
Stephanie Markert et al.
SCIENCE (2007)
Autotrophic CO2 fixation via the reductive tricarboxylic acid cycle in different lineages within the phylum Aquificae: evidence for two ways of citrate cleavage
Michael Hugler et al.
ENVIRONMENTAL MICROBIOLOGY (2007)
In situ analysis of nitrogen fixation and metabolic switching in unicellular thermophilic cyanobacteria inhabiting hot spring microbial mats
AS Steunou et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Xanthorhodopsin:: A proton pump with a light-harvesting carotenoid antenna
SP Balashov et al.
SCIENCE (2005)
New insights into metabolic properties of marine bacteria encoding proteorhodopsins
G Sabehi et al.
PLOS BIOLOGY (2005)
Diel variations in carbon metabolism by green nonsulfur-like bacteria in alkaline siliceous hot spring microbial mats from Yellowstone National Park
MTJ van der Meer et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)
ARB:: a software environment for sequence data
W Ludwig et al.
NUCLEIC ACIDS RESEARCH (2004)
CD-Search: protein domain annotations on the fly
A Marchler-Bauer et al.
NUCLEIC ACIDS RESEARCH (2004)
Phylogenetic and physiological characterization of a filamentous anoxygenic photoautotrophic bacterium 'Candidatus Chlorothrix halophila' gen. nov., sp nov., recovered from hypersaline microbial mats
JA Klappenbach et al.
ARCHIVES OF MICROBIOLOGY (2004)
Characterization of the chlorosome antenna of the filamentous anoxygenic phototrophic bacterium Chloronema sp strain UdG9001
F Gich et al.
ARCHIVES OF MICROBIOLOGY (2003)
Geographical isolation in hot spring cyanobacteria
RT Papke et al.
ENVIRONMENTAL MICROBIOLOGY (2003)
Microscopic examination of distribution and phenotypic properties of phylogenetically diverse Chloroflexaceae-related bacteria in hot spring microbial mats
U Nübel et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)
Oxidative cleavage of carotenoids catalyzed by enzyme models and beta-carotene 15,15′-monooxygenase
WD Woggon
PURE AND APPLIED CHEMISTRY (2002)
Signature lipids and stable carbon isotope analyses of octopus spring hyperthermophilic communities compared with those of Aquificales representatives
LL Jahnke et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2001)
Oxidation of reduced inorganic sulfur compounds by bacteria: Emergence of a common mechanism?
CG Friedrich et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2001)
Fractionation of carbon and hydrogen isotopes in biosynthetic processes
JM Hayes
STABLE ISOTOPE GEOCHEMISTRY (2001)
Proposal of Oscillochloridaceae fam. nov, on the basis of a phylogenetic analysis of the filamentous anoxygenic phototrophic bacteria, and emended description of Oscillochloris and Oscillochloris trichoides in comparison with further new isolates
OI Keppen et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2000)
Highly ordered vertical structure of Synechococcus populations within the one-millimeter-thick photic zone of a hot spring cyanobacterial mat
NB Ramsing et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)
分享论文
