4.6 Article

Genomic dissection of conserved transcriptional regulation in intestinal epithelial cells

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Gastroenterology & Hepatology

Microbiota-induced obesity requires farnesoid X receptor

Ava Parseus et al.

Article Developmental Biology

Identification, visualization and clonal analysis of intestinal stem cells in fish

Narges Aghaallaei et al.

DEVELOPMENT (2016)

Article Oncology

Stem vs non-stem cell origin of colorectal cancer

D. J. Huels et al.

BRITISH JOURNAL OF CANCER (2015)

Article Biochemistry & Molecular Biology

Enhancer Evolution across 20 Mammalian Species

Diego Villar et al.

Article Gastroenterology & Hepatology

MicroRNAs Classify Different Disease Behavior Phenotypes of Crohn's Disease and May Have Prognostic Utility

Bailey C. E. Peck et al.

INFLAMMATORY BOWEL DISEASES (2015)

Article Multidisciplinary Sciences

Single-cell messenger RNA sequencing reveals rare intestinal cell types

Dominic Grun et al.

NATURE (2015)

Article Multidisciplinary Sciences

Integrative analysis of 111 reference human epigenomes

Anshul Kundaje et al.

NATURE (2015)

Article Cell Biology

Developmental regulation of apical endocytosis controls epithelial patterning in vertebrate tubular organs

Alejo E. Rodriguez-Fraticelli et al.

NATURE CELL BIOLOGY (2015)

Review Cell Biology

Dynamic expression and roles of Hes factors in neural development

Ryoichiro Kageyama et al.

CELL AND TISSUE RESEARCH (2015)

Article Biochemistry & Molecular Biology

Transcription Factors GATA4 and HNF4A Control Distinct Aspects of Intestinal Homeostasis in Conjunction with Transcription Factor CDX2

Adrianna K. San Roman et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2015)

Review Physiology

The Role of Gut Hormone Peptide YY in Energy and Glucose Homeostasis: Twelve Years On

Sean Manning et al.

ANNUAL REVIEW OF PHYSIOLOGY, VOL 76 (2014)

Article Biochemistry & Molecular Biology

GATA4 represses an ileal program of gene expression in the proximal small intestine by inhibiting the acetylation of histone H3, lysine 27

B. E. Aronson et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2014)

Review Cell Biology

Wnt signaling in adult intestinal stem cells and cancer

Michaela Krausova et al.

CELLULAR SIGNALLING (2014)

Review Biochemistry & Molecular Biology

Whole-genome duplication in teleost fishes and its evolutionary consequences

Stella M. K. Glasauer et al.

MOLECULAR GENETICS AND GENOMICS (2014)

Article Multidisciplinary Sciences

Principles of regulatory information conservation between mouse and human

Yong Cheng et al.

NATURE (2014)

Article Multidisciplinary Sciences

A comparative encyclopedia of DNA elements in the mouse genome

Feng Yue et al.

NATURE (2014)

Article Multidisciplinary Sciences

Two independent transcription initiation codes overlap on vertebrate core promoters

Vanja Haberle et al.

NATURE (2014)

Article Multidisciplinary Sciences

Intestinal epithelial MyD88 is a sensor switching host metabolism towards obesity according to nutritional status

Amandine Everard et al.

NATURE COMMUNICATIONS (2014)

Review Immunology

Intestinal epithelial cells: regulators of barrier function and immune homeostasis

Lance W. Peterson et al.

NATURE REVIEWS IMMUNOLOGY (2014)

Article Biochemical Research Methods

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

Edward Y. Chen et al.

BMC BIOINFORMATICS (2013)

Review Biochemistry & Molecular Biology

Mucosal Immunology of Food Allergy

M. Cecilia Berin et al.

CURRENT BIOLOGY (2013)

Review Developmental Biology

Conserved non-coding elements and cis regulation: actions speak louder than words

Andrew C. Nelson et al.

DEVELOPMENT (2013)

Review Cell Biology

Stem cells and lineages of the intestine: a developmental and evolutionary perspective

Shigeo Takashima et al.

DEVELOPMENT GENES AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

Intestinal Master Transcription Factor CDX2 Controls Chromatin Access for Partner Transcription Factor Binding

Michael P. Verzi et al.

MOLECULAR AND CELLULAR BIOLOGY (2013)

Article Multidisciplinary Sciences

Histone deacetylase 3 coordinates commensal-bacteria-dependent intestinal homeostasis

Theresa Alenghat et al.

NATURE (2013)

Article Multidisciplinary Sciences

The zebrafish reference genome sequence and its relationship to the human genome

Kerstin Howe et al.

NATURE (2013)

Article Multidisciplinary Sciences

Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq

Cosmas D. Arnold et al.

SCIENCE (2013)

Review Gastroenterology & Hepatology

Current and emerging approaches to define intestinal epithelium-specific transcriptional networks

Anders Kruger Olsen et al.

AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY (2012)

Article Developmental Biology

The metalloproteinase inhibitor Reck is essential for zebrafish DRG development

Andrew Prendergast et al.

DEVELOPMENT (2012)

Article Developmental Biology

Origin of the brush cell lineage in the mouse intestinal epithelium

Matthew Bjerknes et al.

DEVELOPMENTAL BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Novel cis-Regulatory Modules Control Expression of the Hairy and Enhancer of Split-1 (HES1) Transcription Factor in Myoblasts

Danuta M. Jeziorska et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2012)

Article Multidisciplinary Sciences

A map of the cis-regulatory sequences in the mouse genome

Yin Shen et al.

NATURE (2012)

Article Multidisciplinary Sciences

An integrated encyclopedia of DNA elements in the human genome

Ian Dunham et al.

NATURE (2012)

Article Biochemical Research Methods

Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA

Jeremy M. Simon et al.

NATURE PROTOCOLS (2012)

Article Biochemical Research Methods

Identifying ChIP-seq enrichment using MACS

Jianxing Feng et al.

NATURE PROTOCOLS (2012)

Article Biochemical Research Methods

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Cole Trapnell et al.

NATURE PROTOCOLS (2012)

Article Gastroenterology & Hepatology

Role of Smad7 in inflammatory bowel diseases

Giovanni Monteleone et al.

WORLD JOURNAL OF GASTROENTEROLOGY (2012)

Article Cell Biology

Transcriptional Networks in Liver and Intestinal Development

Karyn L. Sheaffer et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2012)

Review Oncology

Intestinal development and differentiation

Taeko K. Noah et al.

EXPERIMENTAL CELL RESEARCH (2011)

Article Developmental Biology

Wnt signaling specifies and patterns intestinal endoderm

Richard I. Sherwood et al.

MECHANISMS OF DEVELOPMENT (2011)

Article Multidisciplinary Sciences

Epithelial cell proliferation in the developing zebrafish intestine is regulated by the Wnt pathway and microbial signaling via Myd88

Sarah E. Cheesman et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Biochemical Research Methods

Fast and SNP-tolerant detection of complex variants and splicing in short reads

Thomas D. Wu et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

TagDust-a program to eliminate artifacts from next generation sequencing data

Timo Lassmann et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

Da Wei Huang et al.

NATURE PROTOCOLS (2009)

Review Genetics & Heredity

Nucleosome positioning and gene regulation: advances through genomics

Cizhong Jiang et al.

NATURE REVIEWS GENETICS (2009)

Review Microbiology

Enteric infection meets intestinal function: how bacterial pathogens cause diarrhoea

V. K. Viswanathan et al.

NATURE REVIEWS MICROBIOLOGY (2009)

Article Developmental Biology

Notch-responsive cells initiate the secondary transition in larval zebrafish pancreas

Michael J. Parsons et al.

MECHANISMS OF DEVELOPMENT (2009)

Article Biochemistry & Molecular Biology

Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b

David M. McGaughey et al.

GENOME RESEARCH (2008)

Review Nutrition & Dietetics

Malnutrition as an enteric infectious disease with long-term effects on child development

Richard L. Guerrant et al.

NUTRITION REVIEWS (2008)

Article Anatomy & Morphology

The Tol2kit:: A multisite Gateway-based construction kit for Tol2 transposon transgenesis constructs

Kristen M. Kwan et al.

DEVELOPMENTAL DYNAMICS (2007)

Review Biochemistry & Molecular Biology

The diverse functions of Kruppel-like factors 4 and 5 in epithelial biology and pathobiology

Beth B. McConnell et al.

BIOESSAYS (2007)

Review Biochemistry & Molecular Biology

Paleontological evidence to date the tree of life

Michael J. Benton et al.

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Gastroenterology & Hepatology

The canonical Wnt signalling pathway and its APC partner in colon cancer development

Jean Schneikert et al.

Article Biochemistry & Molecular Biology

Gata4 is essential for the maintenance of Jejunal-Ileal identities in the adult mouse small intestine

Tjalling Bosse et al.

MOLECULAR AND CELLULAR BIOLOGY (2006)

Article Immunology

E proteins and Notch signaling cooperate to promote T cell lineage specification and commitment

Tomokatsu Ikawa et al.

JOURNAL OF EXPERIMENTAL MEDICINE (2006)

Article Developmental Biology

Formation of the digestive system in zebrafish: III. Intestinal epithelium morphogenesis

ANY Ng et al.

DEVELOPMENTAL BIOLOGY (2005)

Article Developmental Biology

Intestinal growth and differentiation in zebrafish

KN Wallace et al.

MECHANISMS OF DEVELOPMENT (2005)

Article Cell Biology

Epithelial lineages of the small intestine have unique patterns of GATA expression

MR Dusing et al.

JOURNAL OF MOLECULAR HISTOLOGY (2005)

Article Biochemical Research Methods

Open source clustering software

MJL de Hoon et al.

BIOINFORMATICS (2004)

Review Genetics & Heredity

Subfunction partitioning, the teleost radiation and the annotation of the human genome

J Postlethwait et al.

TRENDS IN GENETICS (2004)

Article Multidisciplinary Sciences

Degeneracy and complexity in biological systems

GM Edelman et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)

Article Biochemistry & Molecular Biology

Zebrafish comparative genomics and the origins of vertebrate chromosomes

JH Postlethwait et al.

GENOME RESEARCH (2000)

Article Genetics & Heredity

Control sf endodermal endocrine development by Hes-1

J Jensen et al.

NATURE GENETICS (2000)