相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Inter- and intra-subtype variation of Blastocystis subtypes isolated from diarrheic and non-diarrheic patients in Iran
Atefe Alinaghizade et al.
INFECTION GENETICS AND EVOLUTION (2017)
Subtyping of Blastocystis sp isolated from symptomatic and asymptomatic individuals in Makkah, Saudi Arabia
Raafat T. Mohamed et al.
PARASITES & VECTORS (2017)
Lateral Gene Transfer in the Adaptation of the Anaerobic Parasite Blastocystis to the Gut
Laura Eme et al.
CURRENT BIOLOGY (2017)
Shedding light on the expansion and diversification of the Cdc48 protein family during the rise of the eukaryotic cell
Nickias Kienle et al.
BMC EVOLUTIONARY BIOLOGY (2016)
Peroxisomes in parasitic protists
Toni Gabaldon et al.
MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2016)
The Apoptotic Effect of Ursolic Acid on SK-Hep-1 Cells is Regulated by the PI3K/Akt, p38 and JNK MAPK Signaling Pathways
Wan-Ling Chuang et al.
MOLECULES (2016)
Blastocystis phylogeny among various isolates from humans to insects
Hisao Yoshikawa et al.
PARASITOLOGY INTERNATIONAL (2016)
Pathogenic mechanisms in Blastocystis spp. - Interpreting results from in vitro and in vivo studies
Sitara S. R. Ajjampur et al.
PARASITOLOGY INTERNATIONAL (2016)
Current status of Blastocystis: A personal view
C. Rune Stensvold et al.
PARASITOLOGY INTERNATIONAL (2016)
Plasmodium falciparum Rab1A Localizes to Rhoptries in Schizonts
David Morse et al.
PLOS ONE (2016)
The TopoVIB-Like protein family is required for meiotic DNA double-strand break formation
T. Robert et al.
SCIENCE (2016)
Comparison of faecal microbiota in Blastocystis-positive and Blastocystis-negative irritable bowel syndrome patients
Robyn Nagel et al.
MICROBIOME (2016)
Colonization with the enteric protozoa Blastocystis is associated with increased diversity of human gut bacterial microbiota
Christophe Audebert et al.
SCIENTIFIC REPORTS (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
Spatiotemporal regulation of the anaphase-promoting complex in mitosis
Sushama Sivakumar et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2015)
Diversity and origins of anaerobic metabolism in mitochondria and related organelles
Courtney W. Stairs et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2015)
Draft genome sequence of the intestinal parasite Blastocystis subtype 4-isolate WR1
Ivan Wawrzyniak et al.
GENOMICS DATA (2015)
A retrospective metagenomics approach to studying Blastocystis
Lee O'Brien Andersen et al.
FEMS MICROBIOLOGY ECOLOGY (2015)
Identification of Horizontally-transferred Genomic Islands and Genome Segmentation Points by Using the GC Profile Method
Ren Zhang et al.
CURRENT GENOMICS (2014)
The microbial eukaryote Blastocystis is a prevalent and diverse member of the healthy human gut microbiota
Pauline D. Scanlan et al.
FEMS MICROBIOLOGY ECOLOGY (2014)
A Large Number of Nuclear Genes in the Human Parasite Blastocystis Require mRNA Polyadenylation to Create Functional Termination Codons
Vladimir Klimes et al.
GENOME BIOLOGY AND EVOLUTION (2014)
Bacterial collagen-like proteins that form triple-helical structures
Zhuoxin Yu et al.
JOURNAL OF STRUCTURAL BIOLOGY (2014)
Molecular architecture and mechanism of the anaphase-promoting complex
Leifu Chang et al.
NATURE (2014)
MEROPS: the database of proteolytic enzymes, their substrates and inhibitors
Neil D. Rawlings et al.
NUCLEIC ACIDS RESEARCH (2014)
Expression and Evolution of the Non-Canonically Translated Yeast Mitochondrial Acetyl-CoA Carboxylase Hfa1p
Fumi Suomi et al.
PLOS ONE (2014)
Blastocystis Is Associated with Decrease of Fecal Microbiota Protective Bacteria: Comparative Analysis between Patients with Irritable Bowel Syndrome and Control Subjects
Celine Nourrisson et al.
PLOS ONE (2014)
Missing Pieces of an Ancient Puzzle: Evolution of the Eukaryotic Membrane-Trafficking System
Alexander Schlacht et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2014)
Update on the pathogenic potential and treatment options for Blastocystis sp
Tamalee Roberts et al.
GUT PATHOGENS (2014)
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing
Patrick J. Keeling et al.
PLOS BIOLOGY (2014)
Intra-Subtype Variation in Enteroadhesion Accounts for Differences in Epithelial Barrier Disruption and Is Associated with Metronidazole Resistance in Blastocystis Subtype-7
Zhaona Wu et al.
PLOS NEGLECTED TROPICAL DISEASES (2014)
The mitochondrial Ras-related GTPase Miro: views from inside and outside the metazoan kingdom
Shohei Yamaoka et al.
FRONTIERS IN PLANT SCIENCE (2014)
Variable geographic distribution of Blastocystis subtypes and its potential implications
Mohammed A. Alfellani et al.
ACTA TROPICA (2013)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
nhmmer: DNA homology search with profile HMMs
Travis J. Wheeler et al.
BIOINFORMATICS (2013)
Infernal 1.1: 100-fold faster RNA homology searches
Eric P. Nawrocki et al.
BIOINFORMATICS (2013)
Draft Assembly of the Symbiodinium minutum Nuclear Genome Reveals Dinoflagellate Gene Structure
Eiichi Shoguchi et al.
CURRENT BIOLOGY (2013)
Cryptic organelle homology in apicomplexan parasites: insights from evolutionary cell biology
Christen M. Klinger et al.
CURRENT OPINION IN MICROBIOLOGY (2013)
The cytochrome P450 genesis locus: the origin and evolution of animal cytochrome P450s
David R. Nelson et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)
Blastocystis: getting to grips with our guileful guest
Pauline D. Scanlan et al.
TRENDS IN PARASITOLOGY (2013)
Genome of the red alga Porphyridium purpureum
Debashish Bhattacharya et al.
NATURE COMMUNICATIONS (2013)
An Overexpression Screen of Toxoplasma gondii Rab-GTPases Reveals Distinct Transport Routes to the Micronemes
Katrin Kremer et al.
PLOS PATHOGENS (2013)
The significant other: splicing by the minor spliceosome
Janne J. Turunen et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2013)
The TvLEGU-1, a Legumain-Like Cysteine Proteinase, Plays a Key Role in Trichomonas vaginalis Cytoadherence
Francisco Javier Rendon-Gandarilla et al.
BIOMED RESEARCH INTERNATIONAL (2013)
Blastocystis, an unrecognized parasite: an overview of pathogenesis and diagnosis
Ivan Wawrzyniak et al.
THERAPEUTIC ADVANCES IN INFECTIOUS DISEASE (2013)
Origin and evolution of spliceosomal introns
Igor B. Rogozin et al.
BIOLOGY DIRECT (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Biochemistry and Evolution of Anaerobic Energy Metabolism in Eukaryotes
Miklos Mueller et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2012)
MitoMiner: a data warehouse for mitochondrial proteomics data
Anthony C. Smith et al.
NUCLEIC ACIDS RESEARCH (2012)
GenomeView: a next-generation genome browser
Thomas Abeel et al.
NUCLEIC ACIDS RESEARCH (2012)
The genome of flax (Linum usitatissimum) assembled de novo from short shotgun sequence reads
Zhiwen Wang et al.
PLANT JOURNAL (2012)
Confutation of the existence of sequence-conserved cytochrome P450 enzymes in Plasmodium falciparum
Raewadee Wisedpanichkij et al.
ACTA TROPICA (2011)
Scaffolding pre-assembled contigs using SSPACE
Marten Boetzer et al.
BIOINFORMATICS (2011)
Conservation of ciliary proteins in plants with no cilia
Matthew E. Hodges et al.
BMC PLANT BIOLOGY (2011)
The Ras related GTPase Miro is not required for mitochondrial transport in Dictyostelium discoideum
Georgia Vlahou et al.
EUROPEAN JOURNAL OF CELL BIOLOGY (2011)
Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania
Matthew B. Rogers et al.
GENOME RESEARCH (2011)
The evolution of glycogen and starch metabolism in eukaryotes gives molecular clues to understand the establishment of plastid endosymbiosis
Steven Ball et al.
JOURNAL OF EXPERIMENTAL BOTANY (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
CDD: a Conserved Domain Database for the functional annotation of proteins
Aron Marchler-Bauer et al.
NUCLEIC ACIDS RESEARCH (2011)
A Single Peroxisomal Targeting Signal Mediates Matrix Protein Import in Diatoms
Nicola H. Gonzalez et al.
PLOS ONE (2011)
Folate Production by Probiotic Bacteria
Maddalena Rossi et al.
NUTRIENTS (2011)
Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite
France Denoeud et al.
GENOME BIOLOGY (2011)
Genome analysis and comparative genomics of a Giardia intestinalis assemblage E isolate
Jon Jerlstrom-Hultqvist et al.
BMC GENOMICS (2010)
Ray: Simultaneous Assembly of Reads from a Mix of High-Throughput Sequencing Technologies
Sebastien Boisvert et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2010)
Comparative Testing of DNA Segmentation Algorithms Using Benchmark Simulations
Eran Elhaik et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
Central and storage carbon metabolism of the brown alga Ectocarpus siliculosus: insights into the origin and evolution of storage carbohydrates in Eukaryotes
Gurvan Michel et al.
NEW PHYTOLOGIST (2010)
EuPathDB: a portal to eukaryotic pathogen databases
Cristina Aurrecoechea et al.
NUCLEIC ACIDS RESEARCH (2010)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
Peroxisome diversity and evolution
Toni Gabaldon
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2010)
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Stephane Guindon et al.
SYSTEMATIC BIOLOGY (2010)
PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
Nicolas Lartillot et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
The Cytochrome P450 Engineering Database: integration of biochemical properties
Demet Sirim et al.
BMC BIOCHEMISTRY (2009)
Endoplasmic Reticulum-Associated Secretory Proteins Sec20p, Sec39p, and Ds11p Are Involved in Peroxisome Biogenesis
Ryan J. Perry et al.
EUKARYOTIC CELL (2009)
The RAB Family GTPase Rab1A from Plasmodium falciparum Defines a Unique Paralog Shared by Chromalveolates and Rhizaria
Marek Elias et al.
JOURNAL OF EUKARYOTIC MICROBIOLOGY (2009)
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
Brandi L. Cantarel et al.
NUCLEIC ACIDS RESEARCH (2009)
A Complex Cell Division Machinery Was Present in the Last Common Ancestor of Eukaryotes
Laura Eme et al.
PLOS ONE (2009)
Trehalose metabolism and signaling
Matthew J. Paul et al.
ANNUAL REVIEW OF PLANT BIOLOGY (2008)
Organelles in Blastocystis that blur the distinction between mitochondria and hydrogenosomes
Alexandra Stechmann et al.
CURRENT BIOLOGY (2008)
PclA, a pneumococcal collagen-like protein with selected strain distribution, contributes to adherence and invasion of host cells
Gavin K. Paterson et al.
FEMS MICROBIOLOGY LETTERS (2008)
An Entamoeba histolytica rhomboid protease with atypical specificity cleaves a surface lectin involved in phagocytosis and immune evasion
Leigh A. Baxt et al.
GENES & DEVELOPMENT (2008)
Complete circular DNA in the mitochondria-like organelles of Blastocystis hominis
Ivan Wawrzyniak et al.
INTERNATIONAL JOURNAL FOR PARASITOLOGY (2008)
Identification of the First Prokaryotic Collagen Sequence Motif That Mediates Binding to Human Collagen Receptors, Integrins α2β1 and α11β1
Clayton C. Caswell et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2008)
Analysis of Two Genomes from the Mitochondrion-Like Organelle of the Intestinal Parasite Blastocystis: Complete Sequences, Gene Content, and Genome Organization
Vicente Perez-Brocal et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
jModelTest: Phylogenetic model averaging
David Posada
MOLECULAR BIOLOGY AND EVOLUTION (2008)
An improved general amino acid replacement matrix
Si Quang Le et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Biochemical characterization of a mitochondrial-like organelle from Blastocystis sp subtype 7
Yelena Lantsman et al.
MICROBIOLOGY-SGM (2008)
An Expanded Inventory of Conserved Meiotic Genes Provides Evidence for Sex in Trichomonas vaginalis
Shehre-Banoo Malik et al.
PLOS ONE (2008)
A probabilistic model of local sequence alignment that simplifies statistical significance estimation
Sean R. Eddy
PLOS COMPUTATIONAL BIOLOGY (2008)
Blastocystis ratti contains cysteine proteases that mediate interleukin-8 response from human intestinal epithelial cells in an NF-κB-dependent manner
Manoj K. Puthia et al.
EUKARYOTIC CELL (2008)
The Cytochrome P450 Engineering Database: a navigation and prediction tool for the cytochrome P450 protein family
Markus Fischer et al.
BIOINFORMATICS (2007)
WoLF PSORT: protein localization predictor
Paul Horton et al.
NUCLEIC ACIDS RESEARCH (2007)
Functional classification of Arabidopsis peroxisome biogenesis factors proposed from analyses of knockdown mutants
Kazumasa Nito et al.
PLANT AND CELL PHYSIOLOGY (2007)
Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis
Jane M. Carlton et al.
SCIENCE (2007)
Locating proteins in the cell using TargetP, SignalP and related tools
Olof Emanuelsson et al.
NATURE PROTOCOLS (2007)
MAP kinase pathways as regulators of fungal virulence
Elvira Roman et al.
TRENDS IN MICROBIOLOGY (2007)
Vitamin and cofactor biosynthesis pathways in Plasmodium and other apicomplexan parasites
Sylke Mueller et al.
TRENDS IN PARASITOLOGY (2007)
Siglecs and their roles in the immune system
Paul R. Crocker et al.
NATURE REVIEWS IMMUNOLOGY (2007)
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
Alexandros Stamatakis
BIOINFORMATICS (2006)
Two Plasmodium rhomboid proteases preferentially cleave different adhesins implicated in all invasive stages of malaria
Rosanna P. Baker et al.
PLOS PATHOGENS (2006)
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
M Stanke et al.
BMC BIOINFORMATICS (2006)
Degradation of human secretory immunoglobulin A by Blastocystis
MK Puthia et al.
PARASITOLOGY RESEARCH (2005)
Entamoeba histolytica:: Observations on metabolism based on the genome sequence
IJ Anderson et al.
EXPERIMENTAL PARASITOLOGY (2005)
A spatially localized rhomboid protease cleaves cell surface adhesins essential for invasion by Toxoplasma
F Brossier et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Molecular phylogenies of Blastocystis isolates from different hosts: Implications for genetic diversity, identification of species, and zoonosis
C Noel et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2005)
A sensitive predictor for potential GPI lipid modification sites in fungal protein sequences and its application to genome-wide studies for Aspergillus nidulans, Candida albicans Neurospora crassa, Saccharomyces cerevisiae and Schizosaccharomyces pombe
B Eisenhaber et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
The mechanisms of vesicle budding and fusion
JS Bonifacino et al.
CELL (2004)
The genome of the diatom Thalassiosira pseudonana:: Ecology, evolution, and metabolism
EV Armbrust et al.
SCIENCE (2004)
Cysteine peptidases as virulence factors of Leishmania
JC Mottram et al.
CURRENT OPINION IN MICROBIOLOGY (2004)
The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome
CL Will et al.
RNA (2004)
The Pfam protein families database
A Bateman et al.
NUCLEIC ACIDS RESEARCH (2004)
Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs
B Chevreux et al.
GENOME RESEARCH (2004)
A combined transmembrane topology and signal peptide prediction method
L Käll et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
BJ Haas et al.
NUCLEIC ACIDS RESEARCH (2003)
Structural basis for the function of the β subunit of the eukaryotic signal recognition particle receptor
T Schwartz et al.
CELL (2003)
Potential involvement of extracellular signal-regulated kinase 1 and 2 in encystation of a primitive eukaryote, Giardia lamblia -: Stage-specific activation and intracellular localization
JG Ellis et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
Freeze-fracture and cytochemical studies on the in vitro cyst form of reptilian Blastocystis pythoni
H Yoshikawa et al.
JOURNAL OF EUKARYOTIC MICROBIOLOGY (2003)
The protein kinase complement of the human genome
G Manning et al.
SCIENCE (2002)
Evolution of protein kinase signaling from yeast to man
G Manning et al.
TRENDS IN BIOCHEMICAL SCIENCES (2002)
The anaphase-promoting complex: it's not just for mitosis any more
JW Harper et al.
GENES & DEVELOPMENT (2002)
A collagen-like surface glycoprotein is a structural component of the Bacillus anthracis exosporium
P Sylvestre et al.
MOLECULAR MICROBIOLOGY (2002)
Cysteine proteases of parasitic organisms
M Sajid et al.
MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2002)
Recent improvements to the SMART domain-based sequence annotation resource
I Letunic et al.
NUCLEIC ACIDS RESEARCH (2002)
Pyruvate:NADP+ oxidoreductase from the mitochondrion of Euglena gracilis and from the apicomplexan Cryptosporidium parvum:: A biochemical relic linking pyruvate metabolism in mitochondriate and amitochondriate protists
C Rotte et al.
MOLECULAR BIOLOGY AND EVOLUTION (2001)
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
A Krogh et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
J Castresana
MOLECULAR BIOLOGY AND EVOLUTION (2000)
分享论文
