4.7 Article

Small methyltransferase RlmH assembles a composite active site to methylate a ribosomal pseudouridine

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Structural and functional insights into tRNA binding and adenosine N1-methylation by an archaeal Trm10 homologue

Bart Van Laer et al.

NUCLEIC ACIDS RESEARCH (2016)

Review Chemistry, Multidisciplinary

Post-transcriptional Modifications Modulate rRNA Structure and Ligand Interactions

Jun Jiang et al.

ACCOUNTS OF CHEMICAL RESEARCH (2016)

Review Microbiology

Emerging roles of RNA modifications in bacteria

Carmelita Nora Marbaniang et al.

CURRENT OPINION IN MICROBIOLOGY (2016)

Review Biochemistry & Molecular Biology

N6-Methylated Adenosine in RNA: From Bacteria to Humans

Petr V. Sergiev et al.

JOURNAL OF MOLECULAR BIOLOGY (2016)

Review Biochemistry & Molecular Biology

What do we know about ribosomal RNA methylation in Escherichia coli?

O. V. Sergeeva et al.

BIOCHIMIE (2015)

Article Multidisciplinary Sciences

Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD

Takuhiro Ito et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Biochemical Research Methods

How good are my data and what is the resolution?

Philip R. Evans et al.

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY (2013)

Article Biotechnology & Applied Microbiology

Genome-scale identification and characterization of ethanol tolerance genes in Escherichia coli

Lauren B. A. Woodruff et al.

METABOLIC ENGINEERING (2013)

Article Biochemistry & Molecular Biology

Role of Pseudouridine in Structural Rearrangements of Helix 69 During Bacterial Ribosome Assembly

Yogo Sakakibara et al.

ACS CHEMICAL BIOLOGY (2012)

Article Multidisciplinary Sciences

Linking Crystallographic Model and Data Quality

P. Andrew Karplus et al.

SCIENCE (2012)

Article Biochemical Research Methods

REFMAC5 for the refinement of macromolecular crystal structures

Garib N. Murshudov et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2011)

Article Biochemical Research Methods

Overview of the CCP4 suite and current developments

Martyn D. Winn et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2011)

Article Biochemistry & Molecular Biology

Pneumocystis S-Adenosylmethionine Transport A Potential Drug Target

Oscar Perez-Leal et al.

AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY (2011)

Article Biochemistry & Molecular Biology

Helix 69 Is Key for Uniformity during Substrate Selection on the Ribosome

Rodrigo F. Ortiz-Meoz et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2011)

Article Biochemical Research Methods

MolProbity: all-atom structure validation for macromolecular crystallography

Vincent B. Chen et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2010)

Article Biochemical Research Methods

XDS

Wolfgang Kabsch

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY (2010)

Article Biochemical Research Methods

PHENIX: a comprehensive Python-based system for macromolecular structure solution

Paul D. Adams et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2010)

Article Multidisciplinary Sciences

Experimental detection of knotted conformations in denatured proteins

Anna L. Mallam et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemistry & Molecular Biology

Specificity and kinetics of 23S rRNA modification enzymes RlmH and RluD

Rya Ero et al.

Article Biochemistry & Molecular Biology

Structure of the Thiostrepton Resistance Methyltransferase•S-Adenosyl-L-methionine Complex and Its Interaction with Ribosomal RNA

Mark S. Dunstan et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2009)

Article Biochemistry & Molecular Biology

Ribosomal Intersubunit Bridge B2a Is Involved in Factor-Dependent Translation Initiation and Translational Processivity

Kalle Kipper et al.

JOURNAL OF MOLECULAR BIOLOGY (2009)

Article Multidisciplinary Sciences

The Crystal Structure of the Ribosome Bound to EF-Tu and Aminoacyl-tRNA

T. Martin Schmeing et al.

SCIENCE (2009)

Article Biochemistry & Molecular Biology

Recognition of aminoacyl-tRNA: a common molecular mechanism revealed by cryo-EM

Wen Li et al.

EMBO JOURNAL (2008)

Article Biochemistry & Molecular Biology

Structural insights into ribosome recycling factor interactions with the 70S ribosome

Raj D. Pai et al.

JOURNAL OF MOLECULAR BIOLOGY (2008)

Article Multidisciplinary Sciences

Structural basis for translation termination on the 70S ribosome

Martin Laurberg et al.

NATURE (2008)

Article Biochemistry & Molecular Biology

The crystal structure of Nep1 reveals an extended SPOUT-class methyltransferase fold and a pre-organized SAM-binding site

Alexander B. Taylor et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Multidisciplinary Sciences

Crystal structure of a translation termination complex formed with release factor RF2

Andrei Korostelev et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemistry & Molecular Biology

Identification of pseudouridine methyltransferase in Escherichia coli

Rya Ero et al.

Article Biochemistry & Molecular Biology

YbeA is the m3Ψ methyltransferase RlmH that targets nucleotide 1915 in 23S rRNA

Elzbieta Purta et al.

Article Multidisciplinary Sciences

Insights into Translational Termination from the Structure of RF2 Bound to the Ribosome

Albert Weixlbaumer et al.

SCIENCE (2008)

Article Biochemistry & Molecular Biology

The yeast ribosome synthesis factor Emg1 is a novel member of the superfamily of alpha/beta knot fold methyltransferases

Nicolas Leulliot et al.

NUCLEIC ACIDS RESEARCH (2008)

Review Biochemistry & Molecular Biology

Inference of macromolecular assemblies from crystalline state

Evgeny Krissinel et al.

JOURNAL OF MOLECULAR BIOLOGY (2007)

Article Biochemistry & Molecular Biology

Crystal structure of the ribosome recycling factor bound to the ribosome

Albert Weixlbaumer et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2007)

Article Chemistry, Multidisciplinary

Phaser crystallographic software

Airlie J. McCoy et al.

JOURNAL OF APPLIED CRYSTALLOGRAPHY (2007)

Review Biochemical Research Methods

Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases

Karolina L. Tkaczuk et al.

BMC BIOINFORMATICS (2007)

Article Biochemical Research Methods

Solving structures of protein complexes by molecular replacement with Phaser

Airlie J. McCoy

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2007)

Article Multidisciplinary Sciences

Structure of the 70S ribosome complexed with mRNA and tRNA

Maria Selmer et al.

SCIENCE (2006)

Article Biochemistry & Molecular Biology

Deletion of a conserved, central ribosomal intersubunit RNA bridge

Iraj K. Ali et al.

MOLECULAR CELL (2006)

Article Biochemistry & Molecular Biology

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba et al.

MOLECULAR SYSTEMS BIOLOGY (2006)

Article Biochemical Research Methods

Scaling and assessment of data quality

P Evans

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2006)

Article Multidisciplinary Sciences

Structures of the bacterial ribosome at 3.5 Å resolution

BS Schuwirth et al.

SCIENCE (2005)

Review Biophysics

Natural history of S-adenosylmethionine-binding proteins -: art. no. 19

PZ Kozbial et al.

BMC STRUCTURAL BIOLOGY (2005)

Article Biochemistry & Molecular Biology

Analysis of the function of E-coli 23S rRNA helix-loop 69 by mutagenesis -: art. no. 18

A Liiv et al.

BMC MOLECULAR BIOLOGY (2005)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemical Research Methods

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

RC Edgar

BMC BIOINFORMATICS (2004)

Article Biochemical Research Methods

Coot:: model-building tools for molecular graphics

P Emsley et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2004)

Article Biochemistry & Molecular Biology

WebLogo: A sequence logo generator

GE Crooks et al.

GENOME RESEARCH (2004)

Article Biochemistry & Molecular Biology

Catalytic mechanism of glycine N-methyltransferase

Y Takata et al.

BIOCHEMISTRY (2003)

Article Biochemistry & Molecular Biology

Locking and unlocking of ribosomal motions

M Valle et al.

Article Biochemical Research Methods

A logarithmic approximation to initial rates of enzyme reactions

WP Lu et al.

ANALYTICAL BIOCHEMISTRY (2003)

Article Biochemistry & Molecular Biology

Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process

M Valle et al.

EMBO JOURNAL (2002)

Article Biochemistry & Molecular Biology

Crystal structures of mycolic acid cyclopropane synthases from Mycobacterium tuberculosis

CC Huang et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2002)

Article Multidisciplinary Sciences

Crystal structure of the ribosome at 5.5 Å resolution

MM Yusupov et al.

SCIENCE (2001)

Article Biochemistry & Molecular Biology

The C terminus of mammalian phospholipase D is required for catalytic activity

MY Liu et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2001)