4.7 Review

Class 2 CRISPR-Cas RNA-guided endonucleases: Swiss Army knives of genome editing

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biotechnology & Applied Microbiology

Multiplex gene editing by CRISPR-Cpf1 using a single crRNA array

Bernd Zetsche et al.

NATURE BIOTECHNOLOGY (2017)

Article Biochemistry & Molecular Biology

Structural Basis for Guide RNA Processing and Seed-Dependent DNA Targeting by CRISPR-Cas12a

Daan C. Swarts et al.

MOLECULAR CELL (2017)

Article Biochemistry & Molecular Biology

C2c1-sgRNA Complex Structure Reveals RNA-Guided DNA Cleavage Mechanism

Liang Liu et al.

MOLECULAR CELL (2017)

Article Biochemistry & Molecular Biology

Structural Basis for the Canonical and Non-canonical PAM Recognition by CRISPR-Cpf1

Takashi Yamano et al.

MOLECULAR CELL (2017)

Article Biochemistry & Molecular Biology

Structural Basis for the Altered PAM Recognition by Engineered CRISPR-Cpf1

Hiroshi Nishimasu et al.

MOLECULAR CELL (2017)

Letter Biochemistry & Molecular Biology

Multiplex Gene Editing in Rice Using the CRISPR-Cpf1 System

Mugui Wang et al.

MOLECULAR PLANT (2017)

Article Biotechnology & Applied Microbiology

Engineered Cpf1 variants with altered PAM specificities

Linyi Gao et al.

NATURE BIOTECHNOLOGY (2017)

Article Biochemical Research Methods

CIRCLE-seq: a highly sensitive in vitro screen for genome-wide CRISPR Cas9 nuclease off-targets

Shengdar Q. Tsai et al.

NATURE METHODS (2017)

Review Microbiology

Diversity and evolution of class 2 CRISPR-Cas systems

Sergey Shmakov et al.

NATURE REVIEWS MICROBIOLOGY (2017)

Article Multidisciplinary Sciences

CRISPR-Cas9 conformational activation as elucidated from enhanced molecular simulations

Giulia Palermo et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Review Multidisciplinary Sciences

CRISPR-Cas: Adapting to change

Simon A. Jackson et al.

SCIENCE (2017)

Article Multidisciplinary Sciences

Nucleic acid detection with CRISPR-Cas13a/C2c2

Jonathan S. Gootenberg et al.

SCIENCE (2017)

Editorial Material Plant Sciences

CRISPR-Cpf1: A New Tool for Plant Genome Editing

Syed Shan-e-Ali Zaidi et al.

TRENDS IN PLANT SCIENCE (2017)

Article Multidisciplinary Sciences

CRISPR-Cpf1 assisted genome editing of Corynebacterium glutamicum

Yu Jiang et al.

NATURE COMMUNICATIONS (2017)

Article Biochemical Research Methods

Efficient Transcriptional Gene Repression by Type V-A CRISPR-Cpf1 from Eubacterium eligens

Seong Keun Kim et al.

ACS SYNTHETIC BIOLOGY (2017)

Article Biochemical Research Methods

Assembly of Francisella novicida Cpf1 endonuclease in complex with guide RNA and target DNA

Pablo Alcon et al.

ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS (2017)

Article Multidisciplinary Sciences

CRISPR-Cpf1 correction of muscular dystrophy mutations in human cardiomyocytes and mice

Yu Zhang et al.

SCIENCE ADVANCES (2017)

Article Biochemistry & Molecular Biology

The Molecular Architecture for RNA-Guided RNA Cleavage by Cas13a

Liang Liu et al.

Review Microbiology

Conformational regulation of CRISPR-associated nucleases

Ryan N. Jackson et al.

CURRENT OPINION IN MICROBIOLOGY (2017)

Article Biochemistry & Molecular Biology

Structures and mechanisms of CRISPR RNA-guided effector nucleases

Hiroshi Nishimasu et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2017)

Review Biochemistry & Molecular Biology

CRISPR-Based Technologies for the Manipulation of Eukaryotic Genomes

Alexis C. Komor et al.

Article Biochemistry & Molecular Biology

Two Distant Catalytic Sites Are Responsible for C2c2 RNase Activities

Liang Liu et al.

Article Multidisciplinary Sciences

Rationally engineered Cas9 nucleases with improved specificity

Ian M. Slaymaker et al.

SCIENCE (2016)

Review Biochemistry & Molecular Biology

The genome editing revolution: A CRISPR-Cas TALE off-target story

Stefano Stella et al.

BIOESSAYS (2016)

Article Biochemistry & Molecular Biology

Crystal Structure of Cpf1 in Complex with Guide RNA and Target DNA

Takashi Yamano et al.

Article Biochemistry & Molecular Biology

PAM-Dependent Target DNA Recognition and Cleavage by C2c1 CRISPR-Cas Endonuclease

Hui Yang et al.

Review Biochemistry & Molecular Biology

Biology and Applications of CRISPR Systems: Harnessing Nature's Toolbox for Genome Engineering

Addison V. Wright et al.

Review Biochemical Research Methods

Exploiting CRISPR-Cas immune systems for genome editing in bacteria

Rodolphe Barrangou et al.

CURRENT OPINION IN BIOTECHNOLOGY (2016)

Article Multidisciplinary Sciences

The CRISPR-associated DNA-cleaving enzyme Cpf1 also processes precursor CRISPR RNA

Ines Fonfara et al.

NATURE (2016)

Article Multidisciplinary Sciences

The crystal structure of Cpf1 in complex with CRISPR RNA

De Dong et al.

NATURE (2016)

Article Multidisciplinary Sciences

Two distinct RNase activities of CRISPR-C2c2 enable guide-RNA processing and RNA detection

Alexandra East-Seletsky et al.

NATURE (2016)

Letter Biotechnology & Applied Microbiology

Targeted mutagenesis in mice by electroporation of Cpf1 ribonucleoproteins

Junho K. Hur et al.

NATURE BIOTECHNOLOGY (2016)

Article Biotechnology & Applied Microbiology

Genome-wide specificities of CRISPR-Cas Cpf1 nucleases in human cells

Benjamin P. Kleinstiver et al.

NATURE BIOTECHNOLOGY (2016)

Article Biotechnology & Applied Microbiology

Genome-wide analysis reveals specificities of Cpf1 endonucleases in human cells

Daesik Kim et al.

NATURE BIOTECHNOLOGY (2016)

Review Genetics & Heredity

Defining and improving the genome-wide specificities of CRISPR-Cas9 nucleases

Shengdar Q. Tsai et al.

NATURE REVIEWS GENETICS (2016)

Review Microbiology

CRISPR-Cas adaptation: insights into the mechanism of action

Gil Amitai et al.

NATURE REVIEWS MICROBIOLOGY (2016)

Article Multidisciplinary Sciences

Structures of a CRISPR-Cas9 R-loop complex primed for DNA cleavage

Fuguo Jiang et al.

SCIENCE (2016)

Article Multidisciplinary Sciences

C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector

Omar O. Abudayyeh et al.

SCIENCE (2016)

Editorial Material Genetics & Heredity

Genome editing: progress and challenges for medical applications

Dana Carroll

GENOME MEDICINE (2016)

Article Biochemistry & Molecular Biology

Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System

Bernd Zetsche et al.

Article Biochemistry & Molecular Biology

Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems

Sergey Shmakov et al.

MOLECULAR CELL (2015)

Article Multidisciplinary Sciences

Foreign DNA capture during CRISPR-Cas adaptive immunity

James K. Nunez et al.

NATURE (2015)

Article Multidisciplinary Sciences

Engineered CRISPR-Cas9 nucleases with altered PAM specificities

Benjamin P. Kleinstiver et al.

NATURE (2015)

Article Multidisciplinary Sciences

Conformational control of DNA target cleavage by CRISPR-Cas9

Samuel H. Sternberg et al.

NATURE (2015)

Article Biotechnology & Applied Microbiology

Broadening the targeting range of Staphylococcus aureus CRISPR-Cas9 by modifying PAM recognition

Benjamin P. Kleinstiver et al.

NATURE BIOTECHNOLOGY (2015)

Review Microbiology

An updated evolutionary classification of CRISPR-Cas systems

Kira S. Makarova et al.

NATURE REVIEWS MICROBIOLOGY (2015)

Article Multidisciplinary Sciences

A Cas9-guide RNA complex preorganized for target DNA recognition

Fuguo Jiang et al.

SCIENCE (2015)

Article Biochemistry & Molecular Biology

Visualizing phosphodiester-bond hydrolysis by an endonuclease

Rafael Molina et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)

Review Microbiology

Biogenesis pathways of RNA guides in archaeal and bacterial CRISPR-Cas adaptive immunity

Emmanuelle Charpentier et al.

FEMS MICROBIOLOGY REVIEWS (2015)

Review Biochemistry & Molecular Biology

Genome Engineering with Targetable Nucleases

Dana Carroll

ANNUAL REVIEW OF BIOCHEMISTRY, VOL 83 (2014)

Article Biochemistry & Molecular Biology

Crystal Structure of Cas9 in Complex with Guide RNA and Target DNA

Hiroshi Nishimasu et al.

Review Biochemistry & Molecular Biology

Development and Applications of CRISPR-Cas9 for Genome Engineering

Patrick D. Hsu et al.

Article Multidisciplinary Sciences

Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease

Carolin Anders et al.

NATURE (2014)

Article Multidisciplinary Sciences

DNA interrogation by the CRISPR RNA-guided endonuclease Cas9

Samuel H. Sternberg et al.

NATURE (2014)

Review Microbiology

Unravelling the structural and mechanistic basis of CRISPR-Cas systems

John van der Oost et al.

NATURE REVIEWS MICROBIOLOGY (2014)

Article Biochemistry & Molecular Biology

Cas1-Cas2 complex formation mediates spacer acquisition during CRISPR-Cas adaptive immunity

James K. Nunez et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2014)

Article Multidisciplinary Sciences

Structures of Cas9 Endonucleases Reveal RNA-Mediated Conformational Activation

Martin Jinek et al.

SCIENCE (2014)

Review Biochemistry & Molecular Biology

Planting the seed: target recognition of short guide RNAs

Tim Kunne et al.

TRENDS IN MICROBIOLOGY (2014)

Article Biochemistry & Molecular Biology

Processing-Independent CRISPR RNAs Limit Natural Transformation in Neisseria meningitidis

Yan Zhang et al.

MOLECULAR CELL (2013)

Article Biotechnology & Applied Microbiology

CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering

Prashant Mali et al.

NATURE BIOTECHNOLOGY (2013)

Article Biotechnology & Applied Microbiology

High-throughput profiling of off-target DNA cleavage reveals RNA-programmed Cas9 nuclease specificity

Vikram Pattanayak et al.

NATURE BIOTECHNOLOGY (2013)

Article Biotechnology & Applied Microbiology

RNA-guided editing of bacterial genomes using CRISPR-Cas systems

Wenyan Jiang et al.

NATURE BIOTECHNOLOGY (2013)

Article Multidisciplinary Sciences

Multiplex Genome Engineering Using CRISPR/Cas Systems

Le Cong et al.

SCIENCE (2013)

Article Biology

RNA-programmed genome editing in human cells

Martin Jinek et al.

Article Biochemistry & Molecular Biology

Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis

Hagen Richter et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli

Ido Yosef et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Multidisciplinary Sciences

Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria

Giedrius Gasiunas et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity

Martin Jinek et al.

SCIENCE (2012)

Article Multidisciplinary Sciences

CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III

Elitza Deltcheva et al.

NATURE (2011)

Review Microbiology

Evolution and classification of the CRISPR-Cas systems

Kira S. Makarova et al.

NATURE REVIEWS MICROBIOLOGY (2011)

Article Multidisciplinary Sciences

RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions

Blake Wiedenheft et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence

Ekaterina Semenova et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Cell Biology

The shape of the DNA minor groove directs binding by the DNA-bending protein Fis

Stefano Stella et al.

GENES & DEVELOPMENT (2010)

Article Multidisciplinary Sciences

The role of DNA shape in protein-DNA recognition

Remo Rohs et al.

NATURE (2009)

Article Multidisciplinary Sciences

Small CRISPR RNAs guide antiviral defense in prokaryotes

Stan J. J. Brouns et al.

SCIENCE (2008)

Article Multidisciplinary Sciences

CRISPR provides acquired resistance against viruses in prokaryotes

Rodolphe Barrangou et al.

SCIENCE (2007)

Article Biochemistry & Molecular Biology

Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements

FJM Mojica et al.

JOURNAL OF MOLECULAR EVOLUTION (2005)

Article Biochemistry & Molecular Biology

Identification of genes that are associated with DNA repeats in prokaryotes

R Jansen et al.

MOLECULAR MICROBIOLOGY (2002)