4.6 Article

How to Name and Classify Your Phage: An Informal Guide

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Prokaryotic Virus Orthologous Groups (pVOGs): a resource for comparative genomics and protein family annotation

Ana Laura Grazziotin et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Biochemistry & Molecular Biology

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

Nuala A. O'Leary et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemical Research Methods

Roary: rapid large-scale prokaryote pan genome analysis

Andrew J. Page et al.

BIOINFORMATICS (2015)

Article Microbiology

Genomic characteristics and environmental distributions of the uncultivated Far-T4 phages

Simon Roux et al.

FRONTIERS IN MICROBIOLOGY (2015)

Article Biochemistry & Molecular Biology

NCBI Viral Genomes Resource

J. Rodney Brister et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

Koichiro Tamura et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

The International Nucleotide Sequence Database Collaboration

Ilene Karsch-Mizrachi et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemical Research Methods

Easyfig: a genome comparison visualizer

Mitchell J. Sullivan et al.

BIOINFORMATICS (2011)

Article Biotechnology & Applied Microbiology

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

Nabil-Fareed Alikhan et al.

BMC GENOMICS (2011)

Article Biochemistry & Molecular Biology

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

Fabian Sievers et al.

MOLECULAR SYSTEMS BIOLOGY (2011)

Article Multidisciplinary Sciences

FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments

Morgan N. Price et al.

PLOS ONE (2010)

Article Multidisciplinary Sciences

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

Aaron E. Darling et al.

PLOS ONE (2010)

Editorial Material Microbiology

Position paper: The creation of a rational scheme for the nomenclature of viruses of Bacteria and Archaea

Andrew M. Kropinski et al.

ENVIRONMENTAL MICROBIOLOGY (2009)

Article Biochemistry & Molecular Biology

Reticulate representation of evolutionary and functional relationships between phage genomes

Gipsi Lima-Mendez et al.

MOLECULAR BIOLOGY AND EVOLUTION (2008)

Article Biochemistry & Molecular Biology

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

A. Dereeper et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

NCBIBLAST: a better web interface

Mark Johnson et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemical Research Methods

Gepard: a rapid and sensitive tool for creating dotplots on genome scale

Jan Krumsiek et al.

BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Microbiology

The Phage Proteomic Tree: a genome-based taxonomy for phage

F Rohwer et al.

JOURNAL OF BACTERIOLOGY (2002)