相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Algorithmic improvements to species delimitation and phylogeny estimation under the multispecies coalescent
Graham Jones
JOURNAL OF MATHEMATICAL BIOLOGY (2017)
Multispecies coalescent delimits structure, not species
Jeet Sukumaran et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Posterior predictive checks of coalescent models: P2C2M, an R package
Michael Gruenstaeudl et al.
MOLECULAR ECOLOGY RESOURCES (2016)
Testing Classical Species Properties with Contemporary Data: How Bad Species in the Brassy Ringlets (Erebia tyndarus complex, Lepidoptera) Turned Good
Paolo Gratton et al.
SYSTEMATIC BIOLOGY (2016)
Multi-locus Analyses Reveal Four Giraffe Species Instead of One
Julian Fennessy et al.
CURRENT BIOLOGY (2016)
Effects of Linked Selective Sweeps on Demographic Inference and Model Selection
Daniel R. Schrider et al.
GENETICS (2016)
Assessing the performance of DNA barcoding using posterior predictive simulations
Anthony J. Barley et al.
MOLECULAR ECOLOGY (2016)
Genomics of local adaptation with gene flow
Anna Tigano et al.
MOLECULAR ECOLOGY (2016)
Species discovery and validation in a cryptic radiation of endangered primates: coalescent-based species delimitation in Madagascar's mouse lemurs
Scott Hotaling et al.
MOLECULAR ECOLOGY (2016)
A genomic perspective on hybridization and speciation
Bret A. Payseur et al.
MOLECULAR ECOLOGY (2016)
CoMuS: simulating coalescent histories and polymorphic data from multiple species
S. Papadantonakis et al.
MOLECULAR ECOLOGY RESOURCES (2016)
A genomic history of Aboriginal Australia
Anna-Sapfo Malaspinas et al.
NATURE (2016)
Ancient gene flow from early modern humans into Eastern Neanderthals
Martin Kuhlwilm et al.
NATURE (2016)
Explosive ice age diversification of kiwi
Jason T. Weir et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
The BPP program for species tree estimation and species delimitation
Ziheng Yang
Current Zoology (2015)
Evaluating the Adequacy of Molecular Clock Models Using Posterior Predictive Simulations
David A. Duchene et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Sky island diversification meets the multispecies coalescent - divergence in the spruce-fir moss spider (Microhexura montivaga, Araneae, Mygalomorphae) on the highest peaks of southern Appalachia
Marshal Hedin et al.
MOLECULAR ECOLOGY (2015)
Can We Identify Genes with Increased Phylogenetic Reliability?
Vinson P. Doyle et al.
SYSTEMATIC BIOLOGY (2015)
The BPP program for species tree estimation and species delimitation
Ziheng Yang
Current Zoology (2015)
Considering gene flow when using coalescent methods to delimit lineages of North American pitvipers of the genus Agkistrodon
Frank T. Burbrink et al.
ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2015)
GENETIC ISOLATION BY ENVIRONMENT OR DISTANCE: WHICH PATTERN OF GENE FLOW IS MOST COMMON?
Jason P. Sexton et al.
EVOLUTION (2014)
Unguided Species Delimitation Using DNA Sequence Data from Multiple Loci
Ziheng Yang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Isolation by environment
Ian J. Wang et al.
MOLECULAR ECOLOGY (2014)
Posterior Predictive Bayesian Phylogenetic Model Selection
Paul O. Lewis et al.
SYSTEMATIC BIOLOGY (2014)
Poor Fit to the Multispecies Coalescent is Widely Detectable in Empirical Data
Noah M. Reid et al.
SYSTEMATIC BIOLOGY (2014)
Species Delimitation Using Bayes Factors: Simulations and Application to the Sceloporus scalaris Species Group (Squamata: Phrynosomatidae)
Jared A. Grummer et al.
SYSTEMATIC BIOLOGY (2014)
The Influence of Gene Flow on Species Tree Estimation: A Simulation Study
Adam D. Leache et al.
SYSTEMATIC BIOLOGY (2014)
Predictive Approaches to Assessing the Fit of Evolutionary Models
Jeremy M. Brown
SYSTEMATIC BIOLOGY (2014)
Detection of Implausible Phylogenetic Inferences Using Posterior Predictive Assessment of Model Fit
Jeremy M. Brown
SYSTEMATIC BIOLOGY (2014)
Species Delimitation using Genome-Wide SNP Data
Adam D. Leache et al.
SYSTEMATIC BIOLOGY (2014)
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
Remco Bouckaert et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
THE CHALLENGE OF SPECIES DELIMITATION AT THE EXTREMES: DIVERSIFICATION WITHOUT MORPHOLOGICAL CHANGE IN PHILIPPINE SUN SKINKS
Anthony J. Barley et al.
EVOLUTION (2013)
Genome-scale coestimation of species and gene trees
Bastien Boussau et al.
GENOME RESEARCH (2013)
How to fail at species delimitation
Bryan C. Carstens et al.
MOLECULAR ECOLOGY (2013)
Inferring Demographic History from a Spectrum of Shared Haplotype Lengths
Kelley Harris et al.
PLOS GENETICS (2013)
Robust Demographic Inference from Genomic and SNP Data
Laurent Excoffier et al.
PLOS GENETICS (2013)
SPECIES DELIMITATION WITH ABC AND OTHER COALESCENT-BASED METHODS: A TEST OF ACCURACY WITH SIMULATIONS AND AN EMPIRICAL EXAMPLE WITH LIZARDS OF THE LIOLAEMUS DARWINII COMPLEX (SQUAMATA: LIOLAEMIDAE)
Arley Camargo et al.
EVOLUTION (2012)
Unified modeling of gene duplication, loss, and coalescence using a locus tree
Matthew D. Rasmussen et al.
GENOME RESEARCH (2012)
Statistics and Truth in Phylogenomics
Sudhir Kumar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
Ecological opportunity and sexual selection together predict adaptive radiation
Catherine E. Wagner et al.
NATURE (2012)
Coalescent-based species delimitation in an integrative taxonomy
Matthew K. Fujita et al.
TRENDS IN ECOLOGY & EVOLUTION (2012)
Estimating hybridization in the presence of coalescence using phylogenetic intraspecific sampling
David Gerard et al.
BMC EVOLUTIONARY BIOLOGY (2011)
Evaluation of a Bayesian Coalescent Method of Species Delimitation
Chi Zhang et al.
SYSTEMATIC BIOLOGY (2011)
How Robust Are Isolation with Migration Analyses to Violations of the IM Model? A Simulation Study
Jared L. Strasburg et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
Bayesian Inference of Species Trees from Multilocus Data
Joseph Heled et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
The Divergence of Chimpanzee Species and Subspecies as Revealed in Multipopulation Isolation-with-Migration Analyses
Jody Hey
MOLECULAR BIOLOGY AND EVOLUTION (2010)
What role does natural selection play in speciation?
N. H. Barton
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2010)
Bayesian species delimitation using multilocus sequence data
Ziheng Yang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Species Delimitation Using a Combined Coalescent and Information-Theoretic Approach: An Example from North American Myotis Bats
Bryan C. Carstens et al.
SYSTEMATIC BIOLOGY (2010)
IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?
Scott V. Edwards
EVOLUTION (2009)
Fine-scale population structure in a desert amphibian: landscape genetics of the black toad (Bufo exsul)
Ian J. Wang
MOLECULAR ECOLOGY (2009)
IBDSim: a computer program to simulate genotypic data under isolation by distance
Raphael Leblois et al.
MOLECULAR ECOLOGY RESOURCES (2009)
Gene tree discordance, phylogenetic inference and the multispecies coalescent
James H. Degnan et al.
TRENDS IN ECOLOGY & EVOLUTION (2009)
Speciation with gene flow could be common
Patrik Nosil
MOLECULAR ECOLOGY (2008)
Population genetics of speciation in nonmodel organisms: I. Ancestral polymorphism in mangroves
Renchao Zhou et al.
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Gene Sampling Strategies for Multi-Locus Population Estimates of Genetic Diversity (θ)
Matthew D. Carling et al.
PLOS ONE (2007)
Species trees from gene trees: Reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions
Liang Liu et al.
SYSTEMATIC BIOLOGY (2007)
Nuclear DNA analyses in genetic studies of populations: practice, problems and prospects
DX Zhang et al.
MOLECULAR ECOLOGY (2003)
Generating samples under a Wright-Fisher neutral model of genetic variation
RR Hudson
BIOINFORMATICS (2002)