相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Stan: A Probabilistic Programming Language
Bob Carpenter et al.
JOURNAL OF STATISTICAL SOFTWARE (2017)
HIV-Host Interactions: Implications for Vaccine Design
Barton F. Haynes et al.
CELL HOST & MICROBE (2016)
Resistance of Transmitted Founder HIV-1 to IFITM-Mediated Restriction
Toshana L. Foster et al.
Cell Host & Microbe (2016)
Interferon Alpha Subtype-Specific Suppression of HIV-1 Infection In Vivo
Kerry J. Lavender et al.
JOURNAL OF VIROLOGY (2016)
Prevention of SHIV transmission by topical IFN-β treatment
R. S. Veazey et al.
MUCOSAL IMMUNOLOGY (2016)
Receptor usage dictates HIV-1 restriction by human TRIM5α in dendritic cell subsets
Carla M. S. Ribeiro et al.
NATURE (2016)
Tracing HIV-1 transmission: envelope traits of HIV-1 transmitter and recipient pairs
Corinna S. Oberle et al.
RETROVIROLOGY (2016)
Vpu-Mediated Counteraction of Tetherin Is a Major Determinant of HIV-1 Interferon Resistance
Dorota Kmiec et al.
MBIO (2016)
Genital inflammation, immune activation and risk of sexual HIV acquisition
Jo-Ann S. Passmore et al.
CURRENT OPINION IN HIV AND AIDS (2016)
Differences in the Selection Bottleneck between Modes of Sexual Transmission Influence the Genetic Composition of the HIV-1 Founder Virus
Damien C. Tully et al.
PLOS PATHOGENS (2016)
Transmission of Multiple HIV-1 Subtype C Transmitted/founder Viruses into the Same Recipients Was not Determined by Modest Phenotypic Differences
Hongshuo Song et al.
Scientific Reports (2016)
HIV and mucosal barrier interactions: consequences for transmission and pathogenesis
Adam Burgener et al.
CURRENT OPINION IN IMMUNOLOGY (2015)
HIV-1 Fitness Cost Associated with Escape from the VRC01 Class of CD4 Binding Site Neutralizing Antibodies
Rebecca M. Lynch et al.
JOURNAL OF VIROLOGY (2015)
Innate immunity against HIV-1 infection
Marcus Altfeld et al.
NATURE IMMUNOLOGY (2015)
Bottlenecks in HIV-1 transmission: insights from the study of founder viruses
Sarah B. Joseph et al.
NATURE REVIEWS MICROBIOLOGY (2015)
HIV-1 and interferons: who's interfering with whom?
Tomas Doyle et al.
NATURE REVIEWS MICROBIOLOGY (2015)
The molecular basis for functional plasticity in type I interferon signaling
Gideon Schreiber et al.
TRENDS IN IMMUNOLOGY (2015)
Transmitted Virus Fitness and Host T Cell Responses Collectively Define Divergent Infection Outcomes in Two HIV-1 Recipients
Ling Yue et al.
PLOS PATHOGENS (2015)
Heterosexual Transmission of Subtype C HIV-1 Selects Consensus-Like Variants without Increased Replicative Capacity or Interferon-α Resistance
Martin J. Deymier et al.
PLOS PATHOGENS (2015)
Interferon-α Subtypes in an Ex Vivo Model of Acute HIV-1 Infection: Expression, Potency and Effector Mechanisms
Michael S. Harper et al.
PLOS PATHOGENS (2015)
Ongoing HIV Transmission and the HIV Care Continuum in North Carolina
Anna B. Cope et al.
PLOS ONE (2015)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Interactions between HIV-1 and the Cell-Autonomous Innate Immune System
Greg J. Towers et al.
CELL HOST & MICROBE (2014)
Characteristics and Quantities of HIV Host Cells in Human Genital Tract Secretions
Joseph A. Politch et al.
JOURNAL OF INFECTIOUS DISEASES (2014)
Activities of Transmitted/Founder and Chronic Clade B HIV-1 Vpu and a C-Terminal Polymorphism Specifically Affecting Virion Release
Moein Jafari et al.
JOURNAL OF VIROLOGY (2014)
Type I interferon responses in rhesus macaques prevent SIV infection and slow disease progression
Netanya G. Sandler et al.
NATURE (2014)
Characterization of HIV-1 envelopes in acutely and chronically infected injection drug users
Behzad Etemad et al.
RETROVIROLOGY (2014)
Selection bias at the heterosexual HIV-1 transmission bottleneck
Jonathan M. Carlson et al.
SCIENCE (2014)
Interferon-stimulated genes: roles in viral pathogenesis
John W. Schoggins
CURRENT OPINION IN VIROLOGY (2014)
IFN- subtypes: distinct biological activities in anti-viral therapy
K. Gibbert et al.
BRITISH JOURNAL OF PHARMACOLOGY (2013)
The Interferon-Inducible MxB Protein Inhibits HIV-1 Infection
Zhenlong Liu et al.
CELL HOST & MICROBE (2013)
Transmitted/Founder and Chronic HIV-1 Envelope Proteins Are Distinguished by Differential Utilization of CCR5
Zahra F. Parker et al.
JOURNAL OF VIROLOGY (2013)
Comparison of Viral Env Proteins from Acute and Chronic Infections with Subtype C Human Immunodeficiency Virus Type 1 Identifies Differences in Glycosylation and CCR5 Utilization and Suggests a New Strategy for Immunogen Design
Li-Hua Ping et al.
JOURNAL OF VIROLOGY (2013)
Human MX2 is an interferon-induced post-entry inhibitor of HIV-1 infection
Caroline Goujon et al.
NATURE (2013)
Structural basis of a unique interferon-β signaling axis mediated via the receptor IFNAR1
Nicole A. de Weerd et al.
NATURE IMMUNOLOGY (2013)
Phenotypic properties of transmitted founder HIV-1
Nicholas F. Parrish et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Relative resistance of HIV-1 founder viruses to control by interferon-alpha
Angharad E. Fenton-May et al.
RETROVIROLOGY (2013)
Generation of Transmitted/Founder HIV-1 Infectious Molecular Clones and Characterization of Their Replication Capacity in CD4 T Lymphocytes and Monocyte-Derived Macrophages
Christina Ochsenbauer et al.
JOURNAL OF VIROLOGY (2012)
Broadly Neutralizing Antibodies Developed by an HIV-Positive Elite Neutralizer Exact a Replication Fitness Cost on the Contemporaneous Virus
D. Noah Sather et al.
JOURNAL OF VIROLOGY (2012)
Codon-usage-based inhibition of HIV protein synthesis by human schlafen 11
Manqing Li et al.
NATURE (2012)
jModelTest 2: more models, new heuristics and parallel computing
Diego Darriba et al.
NATURE METHODS (2012)
Impact of immune escape mutations on HIV-1 fitness in the context of the cognate transmitted/founder genome
Hongshuo Song et al.
RETROVIROLOGY (2012)
HIV Transmission
George M. Shaw et al.
COLD SPRING HARBOR PERSPECTIVES IN MEDICINE (2012)
Transmitted/Founder and Chronic Subtype C HIV-1 Use CD4 and CCR5 Receptors with Equal Efficiency and Are Not Inhibited by Blocking the Integrin α4β7
Nicholas F. Parrish et al.
PLOS PATHOGENS (2012)
Early Low-Titer Neutralizing Antibodies Impede HIV-1 Replication and Select for Virus Escape
Katharine J. Bar et al.
PLOS PATHOGENS (2012)
Barriers to mucosal transmission of immunodeficiency viruses
Brandon F. Keele et al.
BLOOD (2011)
pROC: an open-source package for R and S plus to analyze and compare ROC curves
Xavier Robin et al.
BMC BIOINFORMATICS (2011)
Binding and activity of all human alpha interferon subtypes
Thomas B. Lavoie et al.
CYTOKINE (2011)
Fitness Costs and Diversity of the Cytotoxic T Lymphocyte (CTL) Response Determine the Rate of CTL Escape during Acute and Chronic Phases of HIV Infection
Vitaly V. Ganusov et al.
JOURNAL OF VIROLOGY (2011)
Phenotypic and Immunologic Comparison of Clade B Transmitted/Founder and Chronic HIV-1 Envelope Glycoproteins
Craig B. Wilen et al.
JOURNAL OF VIROLOGY (2011)
SAMHD1 is the dendritic- and myeloid-cell-specific HIV-1 restriction factor counteracted by Vpx
Nadine Laguette et al.
NATURE (2011)
Vpx relieves inhibition of HIV-1 infection of macrophages mediated by the SAMHD1 protein
Kasia Hrecka et al.
NATURE (2011)
Role of donor genital tract HIV-1 diversity in the transmission bottleneck
Debrah I. Boeras et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Recurrent Signature Patterns in HIV-1 B Clade Envelope Glycoproteins Associated with either Early or Chronic Infections
S. Gnanakaran et al.
PLOS PATHOGENS (2011)
Estimation of the Initial Viral Growth Rate and Basic Reproductive Number during Acute HIV-1 Infection
Ruy M. Ribeiro et al.
JOURNAL OF VIROLOGY (2010)
Wide Variation in the Multiplicity of HIV-1 Infection among Injection Drug Users
Katharine J. Bar et al.
JOURNAL OF VIROLOGY (2010)
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Stephane Guindon et al.
SYSTEMATIC BIOLOGY (2010)
High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men
Hui Li et al.
PLOS PATHOGENS (2010)
Evolution of HLA-B*5703 HIV-1 escape mutations in HLA-B*5703-positive individuals and their transmission recipients
Hayley Crawford et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2009)
Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection
Jesus F. Salazar-Gonzalez et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2009)
Induction of a Striking Systemic Cytokine Cascade prior to Peak Viremia in Acute Human Immunodeficiency Virus Type 1 Infection, in Contrast to More Modest and Delayed Responses in Acute Hepatitis B and C Virus Infections
Andrea R. Stacey et al.
JOURNAL OF VIROLOGY (2009)
Heterosexual Transmission of Human Immunodeficiency Virus Type 1 Subtype C: Macrophage Tropism, Alternative Coreceptor Use, and the Molecular Anatomy of CCR5 Utilization
Jesse Isaacman-Beck et al.
JOURNAL OF VIROLOGY (2009)
Quantitating the Multiplicity of Infection with Human Immunodeficiency Virus Type 1 Subtype C Reveals a Non-Poisson Distribution of Transmitted Variants
M. -R. Abrahams et al.
JOURNAL OF VIROLOGY (2009)
Inflammatory Genital Infections Mitigate a Severe Genetic Bottleneck in Heterosexual Transmission of Subtype A and C HIV-1
Richard E. Haaland et al.
PLOS PATHOGENS (2009)
The interferon-induced protein BST-2 restricts HIV-1 release and is downregulated from the cell surface by the viral Vpu protein
Nanette Van Damme et al.
CELL HOST & MICROBE (2008)
A genealogical approach to quantifying lineage divergence
Michael P. Cummings et al.
EVOLUTION (2008)
Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing
Jesus F. Salazar-Gonzalez et al.
JOURNAL OF VIROLOGY (2008)
The ties that bind a virus to the cell
Robert P. Kruger
CELL (2008)
Identification and characterisation of transmitted and early founder virus envelopes in primary HIV-1 infection
Brandon F. Keele et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Setting the stage: host invasion by HIV
Florian Hladik et al.
NATURE REVIEWS IMMUNOLOGY (2008)
Tetherin inhibits retrovirus release and is antagonized by HIV-1 Vpu
Stuart J. D. Neil et al.
NATURE (2008)
Clustal W and clustal X version 2.0
M. A. Larkin et al.
BIOINFORMATICS (2007)
An interferon-α-induced tethering mechanism inhibits HIV-1 and ebola virus particle release but is counteracted by the HIV-1 Vpu protein
Stuart J. D. Neil et al.
CELL HOST & MICROBE (2007)
Effective T-cell responses select human immunodeficiency virus mutants and slow disease progression
A. J. Frater et al.
JOURNAL OF VIROLOGY (2007)
Differential receptor subunit affinities of Type I interferons govern differential signal activation
Eva Jaks et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
Temporal and anatomic relationship between virus replication and cytokine gene expression after vaginal simian immunodeficiency virus infection
K Abel et al.
JOURNAL OF VIROLOGY (2005)
Multiple, linked human immunodeficiency virus type 1 drug resistance mutations in treatment-experienced patients are missed by standard genotype analysis
S Palmer et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2005)
Short-term safety and antiretroviral activity of T-1249, a second-generation fusion inhibitor of HIV
JJ Eron et al.
JOURNAL OF INFECTIOUS DISEASES (2004)
The cytoplasmic body component TRIM5α restricts HIV-1 infection in Old World monkeys
M Stremlau et al.
NATURE (2004)
Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein
AM Sheehy et al.
NATURE (2002)
Emergence of resistant human immunodeficiency virus type 1 in patients receiving fusion inhibitor (T-20) monotherapy
XP Wei et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2002)
分享论文
