4.8 Article

Binding mechanism and dynamic conformational change of C subunit of PKA with different pathways

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

Dysfunctional conformational dynamics of protein kinase A induced by a lethal mutant of phospholamban hinder phosphorylation

Jonggul Kim et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Chemistry, Physical

NMR mapping of protein conformational landscapes using coordinated behavior of chemical shifts upon ligand binding

Alessandro Cembran et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2014)

Article Multidisciplinary Sciences

Dynamic architecture of a protein kinase

Christopher L. McClendon et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Chemistry, Physical

Exploring the Dynamic Functional Landscape of Adenylate Kinase Modulated by Substrates

Yong Wang et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2013)

Article Biochemistry & Molecular Biology

Conformational Equilibrium of N-Myristoylated cAMP-Dependent Protein Kinase A by Molecular Dynamics Simulations

Alessandro Cembran et al.

BIOCHEMISTRY (2012)

Article Biochemistry & Molecular Biology

Predicting the Open Conformations of Protein Kinases Using Molecular Dynamics Simulations

Una Bjarnadottir et al.

BIOPOLYMERS (2012)

Article Chemistry, Physical

The Shadow Map: A General Contact Definition for Capturing the Dynamics of Biomolecular Folding and Function

Jeffrey K. Noel et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2012)

Editorial Material Biochemistry & Molecular Biology

From fluctuation fit to conformational selection: Evolution, rediscovery, and integration of a concept

Beata G. Vertessy et al.

BIOESSAYS (2011)

Article Chemistry, Physical

A Hybrid All-Atom Structure-Based Model for Protein Folding and Large Scale Conformational Transitions

Ludovico Sutto et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2011)

Article Multidisciplinary Sciences

Dynamically committed, uncommitted, and quenched states encoded in protein kinase A revealed by NMR spectroscopy

Larry R. Masterson et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Review Biochemistry & Molecular Biology

Protein kinases: evolution of dynamic regulatory proteins

Susan S. Taylor et al.

TRENDS IN BIOCHEMICAL SCIENCES (2011)

Review Chemistry, Multidisciplinary

Metadynamics

Alessandro Barducci et al.

WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE (2011)

Article Biochemistry & Molecular Biology

Dynamics connect substrate recognition to catalysis in protein kinase A

Larry R. Masterson et al.

NATURE CHEMICAL BIOLOGY (2010)

Article Biochemistry & Molecular Biology

SMOG@ctbp: simplified deployment of structure-based models in GROMACS

Jeffrey K. Noel et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

cAMP-dependent protein kinase: Crystallographic insights into substrate recognition and phosphotransfer

Madhusudan et al.

PROTEIN SCIENCE (2010)

Review Biochemistry & Molecular Biology

Induced fit, conformational selection and independent dynamic segments: an extended view of binding events

Peter Csermely et al.

TRENDS IN BIOCHEMICAL SCIENCES (2010)

Article Multidisciplinary Sciences

Ligand-induced global transitions in the catalytic domain of protein kinase A

Changbong Hyeon et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Chemistry, Physical

GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation

Berk Hess et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2008)

Article Multidisciplinary Sciences

Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms

Kei-ichi Okazaki et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

Allosteric cooperativity in protein kinase A

Larry R. Masterson et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

PKA type IIa holoenzyme reveals a combinatorial strategy for isoform diversity

Jian Wu et al.

SCIENCE (2007)

Article Chemistry, Multidisciplinary

Fly-casting in protein-DNA binding: Frustration between protein folding and electrostatics facilitates target recognition

Yaakov Levy et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)

Article Multidisciplinary Sciences

Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations

Kei-ichi Okazaki et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Multidisciplinary Sciences

Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins

O Miyashita et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biochemistry & Molecular Biology

Dynamic features of cAMP-dependent protein kinase revealed by apoenzyme crystal structure

P Akamine et al.

JOURNAL OF MOLECULAR BIOLOGY (2003)

Article Multidisciplinary Sciences

The protein kinase complement of the human genome

G Manning et al.

SCIENCE (2002)

Article Multidisciplinary Sciences

Escaping free-energy minima

A Laio et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Review Chemistry, Multidisciplinary

Physiological substrates of cAMP-dependent protein kinase

JB Shabb

CHEMICAL REVIEWS (2001)

Review Chemistry, Multidisciplinary

Dynamics of cAMP-dependent protein kinase

DA Johnson et al.

CHEMICAL REVIEWS (2001)

Article Multidisciplinary Sciences

Speeding molecular recognition by using the folding funnel: The fly-casting mechanism

BA Shoemaker et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)