相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Culturing Synechocystis sp Strain PCC 6803 with N2 and CO2 in a Diel Regime Reveals Multiphase Glycogen Dynamics with Low Maintenance Costs
S. Andreas Angermayr et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)
Costs of Clock-Environment Misalignment in Individual Cyanobacterial Cells
Guillaume Lambert et al.
BIOPHYSICAL JOURNAL (2016)
Global characterization of in vivo enzyme catalytic rates and their correspondence to in vitro kcat measurements
Dan Davidi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
pH determines the energetic efficiency of the cyanobacterial CO2 concentrating mechanism
Niall M. Mangan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Unique attributes of cyanobacterial metabolism revealed by improved genome-scale metabolic modeling and essential gene analysis
Jared T. Broddrick et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Diurnal Regulation of Cellular Processes in the Cyanobacterium Synechocystis sp Strain PCC 6803: Insights from Transcriptomic, Fluxomic, and Physiological Analyses
Rajib Saha et al.
MBIO (2016)
Constrained Allocation Flux Balance Analysis
Matteo Mori et al.
PLOS COMPUTATIONAL BIOLOGY (2016)
A Comparison of the Costs and Benefits of Bacterial Gene Expression
Morgan N. Price et al.
PLOS ONE (2016)
Principles of proteome allocation are revealed using proteomic data and genome-scale models
Laurence Yang et al.
SCIENTIFIC REPORTS (2016)
Toward Multiscale Models of Cyanobacterial Growth: A Modular Approach
Stefanie Westermark et al.
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY (2016)
Iterative Refinement for Linear Programming
Ambros M. Gleixner et al.
INFORMS JOURNAL ON COMPUTING (2016)
Giving Time Purpose: The Synechococcus elongatus Clock in a Broader Network Context
Ryan K. Shultzaberger et al.
ANNUAL REVIEW OF GENETICS, VOL 49 (2015)
Genome-scale modelling of microbial metabolism with temporal and spatial resolution
Michael A. Henson
BIOCHEMICAL SOCIETY TRANSACTIONS (2015)
GROWTH OPTIMIZATION OF SYNECHOCOCCUS ELONGATUS PCC7942 IN LAB FLASKS AND A 2-D PHOTOBIOREACTOR
David Kuan et al.
CANADIAN JOURNAL OF CHEMICAL ENGINEERING (2015)
Next-generation genome-scale models for metabolic engineering
Zachary A. King et al.
CURRENT OPINION IN BIOTECHNOLOGY (2015)
Dynamic optimization of metabolic networks coupled with gene expression
Steffen Waldherr et al.
JOURNAL OF THEORETICAL BIOLOGY (2015)
Quantitative prediction of genome-wide resource allocation in bacteria
Anne Goelzer et al.
METABOLIC ENGINEERING (2015)
Quantitative proteomic analysis reveals a simple strategy of global resource allocation in bacteria
Sheng Hui et al.
MOLECULAR SYSTEMS BIOLOGY (2015)
The circadian oscillator in Synechococcus elongatus controls metabolite partitioning during diurnal growth
Spencer Diamond et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
The bioenergetic costs of a gene
Michael Lynch et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Mechanistic links between cellular trade-offs, gene expression, and growth
Andrea Y. Weisse et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Synechococcus elongatus UTEX 2973, a fast growing cyanobacterial chassis for biosynthesis using light and CO2
Jingjie Yu et al.
SCIENTIFIC REPORTS (2015)
Elucidating temporal resource allocation and diurnal dynamics in phototrophic metabolism using conditional FBA
Marco Ruegen et al.
SCIENTIFIC REPORTS (2015)
Modeling and Simulation of Optimal Resource Management during the Diurnal Cycle in Emiliania huxleyi by Genome-Scale Reconstruction and an Extended Flux Balance Analysis Approach
David Knies et al.
METABOLITES (2015)
Systems and photosystems: cellular limits of autotrophic productivity in cyanobacteria
Robert L. Burnap
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY (2015)
Daily Expression Pattern of Protein-Encoding Genes and Small Noncoding RNAs in Synechocystis sp. Strain PCC 6803
Christian Beck et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)
Protein Accounting in the Cellular Economy
Nora Vazquez-Laslop et al.
CELL (2014)
Rhythms in Energy Storage Control the Ability of the Cyanobacterial Circadian Clock to Reset
Gopal K. Pattanayak et al.
CURRENT BIOLOGY (2014)
Daily Rhythms in the Cyanobacterium Synechococcus elongatus Probed by High-resolution Mass Spectrometry-based Proteomics Reveals a Small Defined Set of Cyclic Proteins
Ana C. L. Guerreiro et al.
MOLECULAR & CELLULAR PROTEOMICS (2014)
A Diel Flux Balance Model Captures Interactions between Light and Dark Metabolism during Day-Night Cycles in C3 and Crassulacean Acid Metabolism Leaves
C. Y. Maurice Cheung et al.
PLANT PHYSIOLOGY (2014)
How cyanobacteria pose new problems to old methods: challenges in microarray time series analysis
Robert Lehmann et al.
BMC BIOINFORMATICS (2013)
Circadian Control of Global Gene Expression by the Cyanobacterial Master Regulator RpaA
Joseph S. Markson et al.
CELL (2013)
Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction
Edward J. O'Brien et al.
MOLECULAR SYSTEMS BIOLOGY (2013)
BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA
Ida Schomburg et al.
NUCLEIC ACIDS RESEARCH (2013)
Ultradian metabolic rhythm in the diazotrophic cyanobacterium Cyanothece sp ATCC 51142
Jan Cerveny et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Glycolytic strategy as a tradeoff between energy yield and protein cost
Avi Flamholz et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Flux Balance Analysis of Cyanobacterial Metabolism: The Metabolic Network of Synechocystis sp PCC 6803
Henning Knoop et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
The diversity of cyanobacterial metabolism: genome analysis of multiple phototrophic microorganisms
Christian Beck et al.
BMC GENOMICS (2012)
SABIO-RK-database for biochemical reaction kinetics
Ulrike Wittig et al.
NUCLEIC ACIDS RESEARCH (2012)
Transcriptome and Proteome Dynamics of a Light-Dark Synchronized Bacterial Cell Cycle
Jacob R. Waldbauer et al.
PLOS ONE (2012)
Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis
Juan Nogales et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Cell design in bacteria as a convex optimization problem
Anne Goelzer et al.
AUTOMATICA (2011)
Genome-Scale Metabolic Modeling Elucidates the Role of Proliferative Adaptation in Causing the Warburg Effect
Tomer Shlomi et al.
PLOS COMPUTATIONAL BIOLOGY (2011)
The Metabolic Network of Synechocystis sp. PCC 6803: Systemic Properties of Autotrophic Growth
Henning Knoop et al.
PLANT PHYSIOLOGY (2010)
Interdependence of Cell Growth and Gene Expression: Origins and Consequences
Matthew Scott et al.
SCIENCE (2010)
Shifts in growth strategies reflect tradeoffs in cellular economics
Douwe Molenaar et al.
MOLECULAR SYSTEMS BIOLOGY (2009)
Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
Bryson D. Bennett et al.
NATURE CHEMICAL BIOLOGY (2009)
Cyanobacterial daily life with Kai-based circadian and diurnal genome-wide transcriptional control in Synechococcus elongatus
Hiroshi Ito et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Evolved physiological responses of phytoplankton to their integrated growth environment
Michael J. Behrenfeld et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2008)
Carbon status constrains light acclimation in the cyanobacterium Synechococcus elongatus
TDB MacKenzie et al.
PLANT PHYSIOLOGY (2004)
Succinate dehydrogenase and other respiratory pathways in thylakoid membranes of Synechocystis sp strain PCC 6803:: Capacity comparisons and physiological function
JW Cooley et al.
JOURNAL OF BACTERIOLOGY (2001)