4.4 Article

MC64-Cluster: Many-Core CPU Cluster Architecture and Performance Analysis in B-Tree Searches

期刊

COMPUTER JOURNAL
卷 61, 期 6, 页码 912-925

出版社

OXFORD UNIV PRESS
DOI: 10.1093/comjnl/bxx114

关键词

parallel programming; high-performance computing; hardware architecture; hybrid computing; green computing; bioinformatics; B-tree

资金

  1. 'Ministerio de Economia y Competitividad' (MINECO) [BIO2011-15237-E]
  2. 'Instituto Nacional de Investigacion y Tecnologia Agraria y Alimentaria' (MINECO)
  3. 'Instituto Nacional de Investigacion y Tecnologia Agraria y Alimentaria' (INIA) [RF2012-00002-C02-02]
  4. Consejeria de Agricultura y Pesca [041/C/2007, 75/C/2009, 56/C/2010]
  5. Consejeria de Economia, Innovacion y Ciencia [P11-AGR-7322, P12-AGR-0482]
  6. 'Grupo PAI' of 'Junta de Andalucia' [AGR-248]
  7. 'Universidad de Cordoba' ('Ayuda a Grupos'), Spain

向作者/读者索取更多资源

The MC64-Cluster computer platform was designed, based on many-core CPU microprocessors: Tile64. MC64-Cluster architecture was outlined in terms of both hardware and software, including commands available to manage jobs and provided application programming interfaces to communicate and synchronize tiles, making this system easy to use. Massively concurrent-searches of keys in B-trees, which are used in many applications, including bioinformatics, were used. Remarkable performance improvements were obtained when the cluster resources were combined with those available in host machine (hybrid or heterogeneous environments). These results were even more outstanding when analyzed in terms of performance-per-watt, highlighting their green-computing advantages. Together with the cluster architecture, they represent the main contributions of this work. To our knowledge, this is the first cluster implementation of this kind being developed.

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