相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Dormancy-associated MADS-box genes and microRNAs jointly control dormancy transition in pear (Pyrus pyrifolia white pear group) flower bud
Qingfeng Niu et al.
JOURNAL OF EXPERIMENTAL BOTANY (2016)
Ensembl Genomes 2016: more genomes, more complexity
Paul Julian Kersey et al.
NUCLEIC ACIDS RESEARCH (2016)
Global investigation of the co-evolution of MIRNA genes and microRNA targets during soybean domestication
Tengfei Liu et al.
PLANT JOURNAL (2016)
Retained duplicate genes in green alga Chlamydomonas reinhardtii tend to be stress responsive and experience frequent response gains
Guangxi Wu et al.
BMC GENOMICS (2015)
Polyploidy and genome evolution in plants
Pamela S. Soltis et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2015)
Impacts of Whole-Genome Triplication on MIRNA Evolution in Brassica rapa
Chao Sun et al.
GENOME BIOLOGY AND EVOLUTION (2015)
Identification, evolution, and expression partitioning of miRNAs in allopolyploid Brassica napus
Enhui Shen et al.
JOURNAL OF EXPERIMENTAL BOTANY (2015)
Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
Rui Xia et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
A Burst of miRNA Innovation in the Early Evolution of Butterflies and Moths
Shan Quah et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
The Plant Genome Integrative Explorer Resource: PlantGenIE.org
David Sundell et al.
NEW PHYTOLOGIST (2015)
Evolutionary Patterns and Coevolutionary Consequences of MIRNA Genes and MicroRNA Targets Triggered by Multiple Mechanisms of Genomic Duplications in Soybean
Meixia Zhao et al.
PLANT CELL (2015)
Transcriptomic Analysis of the Regulation of Rhizome Formation in Temperate and Tropical Lotus (Nelumbo nucifera)
Mei Yang et al.
SCIENTIFIC REPORTS (2015)
Genome-Wide Identification of SSR and SNP Markers Based on Whole-Genome Re-Sequencing of a Thailand Wild Sacred Lotus (Nelumbo nucifera)
Jihong Hu et al.
PLOS ONE (2015)
Comparative transcriptomic analysis of the regulation of flowering in temperate and tropical lotus (Nelumbo nucifera) by RNA-Seq
M. Yang et al.
ANNALS OF APPLIED BIOLOGY (2014)
Evolutionary dynamics of leucine-rich repeat receptor-like kinases and related genes in plants: A phylogenomic approach
Tao Shi et al.
JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2014)
Selection-Driven Evolution of Sex-Biased Genes Is Consistent with Sexual Selection in Arabidopsis thaliana
Toni I. Gossmann et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
miRBase: annotating high confidence microRNAs using deep sequencing data
Ana Kozomara et al.
NUCLEIC ACIDS RESEARCH (2014)
miR824-Regulated AGAMOUS-LIKE16 Contributes to Flowering Time Repression in Arabidopsis
Jin-Yong Hu et al.
PLANT CELL (2014)
Tangled up in two: a burst of genome duplications at the end of the Cretaceous and the consequences for plant evolution
Kevin Vanneste et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2014)
Polyploidy and novelty: Gottlieb's legacy
Pamela S. Soltis et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2014)
Adaptive evolution of testis-specific, recently evolved, clustered miRNAs in Drosophila
Jaaved Mohammed et al.
RNA (2014)
Evolutionary history of plant microRNAs
Richard S. Taylor et al.
TRENDS IN PLANT SCIENCE (2014)
Combined haploinsufficiency and purifying selection drive retention of RPL36a paralogs in Arabidopsis
Ruben Casanova-Saez et al.
SCIENTIFIC REPORTS (2014)
Genetic diversity and structure in populations of Nelumbo from America, Thailand and China: Implications for conservation and breeding
Mei Yang et al.
AQUATIC BOTANY (2013)
Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding
Aleksandra Helwak et al.
CELL (2013)
Transposable element-associated microRNA hairpins produce 21-nt sRNAs integrated into typical microRNA pathways in rice
Fangqian Ou-Yang et al.
FUNCTIONAL & INTEGRATIVE GENOMICS (2013)
Pollen-Specific, but Not Sperm-Specific, Genes Show Stronger Purifying Selection and Higher Rates of Positive Selection Than Sporophytic Genes in Capsella grandiflora
Ramesh Arunkumar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Heterogeneity of tumor-induced gene expression changes in the human metabolic network
Jie Hu et al.
NATURE BIOTECHNOLOGY (2013)
The sacred lotus genome provides insights into the evolution of flowering plants
Yun Wang et al.
PLANT JOURNAL (2013)
Function Relaxation Followed by Diversifying Selection after Whole-Genome Duplication in Flowering Plants
Hui Guo et al.
PLANT PHYSIOLOGY (2013)
AUXIN RESPONSE FACTOR17 Is Essential for Pollen Wall Pattern Formation in Arabidopsis
Jun Yang et al.
PLANT PHYSIOLOGY (2013)
High-Throughput Sequencing of Small RNAs from Pollen and Silk and Characterization of miRNAs as Candidate Factors Involved in Pollen-Silk Interactions in Maize
Xiao Ming Li et al.
PLOS ONE (2013)
The Amborella Genome and the Evolution of Flowering Plants
Victor A. Albert et al.
SCIENCE (2013)
Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)
Ray Ming et al.
GENOME BIOLOGY (2013)
Genome-Wide Analysis of MicroRNAs in Sacred Lotus, Nelumbo nucifera (Gaertn)
Yun Zheng et al.
TROPICAL PLANT BIOLOGY (2013)
Large-scale analysis of microRNA evolution
Jose Afonso Guerra-Assuncao et al.
BMC GENOMICS (2012)
Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing
Md Shamimuzzaman et al.
BMC GENOMICS (2012)
Origins and Evolution of MicroRNA Genes in Plant Species
Masafumi Nozawa et al.
GENOME BIOLOGY AND EVOLUTION (2012)
Gamma Paleohexaploidy in the Stem Lineage of Core Eudicots: Significance for MADS-Box Gene and Species Diversification
Dries Vekemans et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
Brassinosteroid, gibberellin and phytochrome impinge on a common transcription module in Arabidopsis
Ming-Yi Bai et al.
NATURE CELL BIOLOGY (2012)
miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
Marc R. Friedlaender et al.
NUCLEIC ACIDS RESEARCH (2012)
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
Yupeng Wang et al.
NUCLEIC ACIDS RESEARCH (2012)
Grass MicroRNA Gene Paleohistory Unveils New Insights into Gene Dosage Balance in Subgenome Partitioning after Whole-Genome Duplication
Michael Abrouk et al.
PLANT CELL (2012)
Identification of Conserved and Novel microRNAs from Liriodendron chinense Floral Tissues
Kun Wang et al.
PLOS ONE (2012)
Diversity, classification and function of the plant protein kinase superfamily
Melissa D. Lehti-Shiu et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)
Gene balance hypothesis: Connecting issues of dosage sensitivity across biological disciplines
James A. Birchler et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Critical roles of RNA-binding proteins in miRNA biogenesis in Arabidopsis
Guodong Ren et al.
RNA BIOLOGY (2012)
ANGIOSPERM PHYLOGENY: 17 GENES, 640 TAXA
Douglas E. Soltis et al.
AMERICAN JOURNAL OF BOTANY (2011)
Diversification of land plants: insights from a family-level phylogenetic analysis
Omar Fiz-Palacios et al.
BMC EVOLUTIONARY BIOLOGY (2011)
Ancestral polyploidy in seed plants and angiosperms
Yuannian Jiao et al.
NATURE (2011)
Petal-specific subfunctionalization of an APETALA3 paralog in the Ranunculales and its implications for petal evolution
Bharti Sharma et al.
NEW PHYTOLOGIST (2011)
Evolution and Functional Diversification of MIRNA Genes
Josh T. Cuperus et al.
PLANT CELL (2011)
Ancient genome duplications during the evolution of kiwifruit (Actinidia) and related Ericales
Tao Shi et al.
ANNALS OF BOTANY (2010)
Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood
Miklos Csuroes
BIOINFORMATICS (2010)
Small RNAs and Their Roles in Plant Development
Xuemei Chen
ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY (2009)
Bias in Plant Gene Content Following Different Sorts of Duplication: Tandem, Whole-Genome, Segmental, or by Transposition
Michael Freeling
ANNUAL REVIEW OF PLANT BIOLOGY (2009)
CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets
Charles Addo-Quaye et al.
BIOINFORMATICS (2009)
Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes
Patrick P. Edger et al.
CHROMOSOME RESEARCH (2009)
Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome
Marcelo A. German et al.
NATURE PROTOCOLS (2009)
Evolution of F-box genes in plants: Different modes of sequence divergence and their relationships with functional diversification
Guixia Xu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Structurally different alleles of the ath-MIR824 microRNA precursor are maintained at high frequency in Arabidopsis thaliana
Juliette de Meaux et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Evolution of plant microRNAs and their targets
Michael J. Axtell et al.
TRENDS IN PLANT SCIENCE (2008)
PlantTFDB: a comprehensive plant transcription factor database
An-Yuan Guo et al.
NUCLEIC ACIDS RESEARCH (2008)
Genetic analysis reveals functional redundancy and the major target genes of the Arabidopsis miR159 family
Robert S. Allen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Redundancy and specialization among plant microRNAs:: role of the MIR164 family in developmental robustness
Patrick Sieber et al.
DEVELOPMENT (2007)
High-Throughput Sequencing of Arabidopsis microRNAs: Evidence for Frequent Birth and Death of MIRNA Genes
Noah Fahlgren et al.
PLOS ONE (2007)
ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination
Jose L. Reyes et al.
PLANT JOURNAL (2007)
Gene loss and evolutionary rates following whole-genome duplication in teleost fishes
Frederic G. Brunet et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity
Michael Freeling et al.
GENOME RESEARCH (2006)
Widespread genome duplications throughout the history of flowering plants
Liying Cui et al.
GENOME RESEARCH (2006)
Conservation and divergence of plant microRNA genes
BH Zhang et al.
PLANT JOURNAL (2006)
Evolution of Arabidopsis microRNA families through duplication events
C Maher et al.
GENOME RESEARCH (2006)
Plant microRNA: A small regulatory molecule with big impact
BH Zhang et al.
DEVELOPMENTAL BIOLOGY (2006)
miRBase: microRNA sequences, targets and gene nomenclature
Sam Griffiths-Jones et al.
NUCLEIC ACIDS RESEARCH (2006)
EXPANDER -: An integrative program suite for microarray data analysis -: art. no. 232
R Shamir et al.
BMC BIOINFORMATICS (2005)
microRNA-directed phasing during trans-acting siRNA biogenesis in plants
E Allen et al.
CELL (2005)
The Arabidopsis GAMYB-like genes, MYB33 and MYB65, are MicroRNA-regulated genes that redundantly facilitate anther development
AA Millar et al.
PLANT CELL (2005)
Molecular signatures of natural selection
R Nielsen
ANNUAL REVIEW OF GENETICS (2005)
The molecular elements that underlie developmental evolution
CR Alonso et al.
NATURE REVIEWS GENETICS (2005)
Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
M Kellis et al.
NATURE (2004)
Pollen and stigma structure and function: The role of diversity in pollination
AF Edlund et al.
PLANT CELL (2004)
Modulation of floral development by a gibberellin-regulated microRNA
P Achard et al.
DEVELOPMENT (2004)
Computational identification of plant MicroRNAs and their targets, including a stress-induced miRNA
MW Jones-Rhoades et al.
MOLECULAR CELL (2004)
Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution
DM Krylov et al.
GENOME RESEARCH (2003)
Role of microRNAs in plant and animal development
JC Carrington et al.
SCIENCE (2003)
Pollen tube growth and guidance is regulated by POP2, an Arabidopsis gene that controls GABA levels
R Palanivelu et al.
CELL (2003)
Dosage sensitivity and the evolution of gene families in yeast
B Papp et al.
NATURE (2003)
Mfold web server for nucleic acid folding and hybridization prediction
M Zuker
NUCLEIC ACIDS RESEARCH (2003)
Evidence for nuclear processing of plant micro RNA and short interfering RNA precursors
I Papp et al.
PLANT PHYSIOLOGY (2003)
Expansion of the receptor-like kinase/Pelle gene family and receptor-like proteins in Arabidopsis
SH Shiu et al.
PLANT PHYSIOLOGY (2003)
Endogenous and silencing-associated small RNAs in plants
C Llave et al.
PLANT CELL (2002)
The role of lineage-specific gene family expansion in the evolution of eukaryotes
O Lespinet et al.
GENOME RESEARCH (2002)