相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。hybridcheck: software for the rapid detection, visualization and dating of recombinant regions in genome sequence data
Ben J. Ward et al.
MOLECULAR ECOLOGY RESOURCES (2016)
Global agricultural intensification during climate change: a role for genomics
Michael Abberton et al.
PLANT BIOTECHNOLOGY JOURNAL (2016)
Genomics of crop wild relatives: expanding the gene pool for crop improvement
Marta Brozynska et al.
PLANT BIOTECHNOLOGY JOURNAL (2016)
Genome puzzle master (GPM): an integrated pipeline for building and editing pseudomolecules from fragmented sequences
Jianwei Zhang et al.
BIOINFORMATICS (2016)
DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies
Chengxi Ye et al.
SCIENTIFIC REPORTS (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
RiTE database: a resource database for genus-wide rice genomics and evolutionary biology
Dario Copetti et al.
BMC GENOMICS (2015)
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing
Konstantin Berlin et al.
NATURE BIOTECHNOLOGY (2015)
Prospects of breeding high-quality rice using post-genomic tools
Roslen Anacleto et al.
THEORETICAL AND APPLIED GENETICS (2015)
Relationships of wild and domesticated rices (Oryza AA genome species) based upon whole chloroplast genome sequences
Peterson W. Wambugu et al.
SCIENTIFIC REPORTS (2015)
The Sahul-Sunda floristic exchange: dated molecular phylogenies document Cenozoic intercontinental dispersal dynamics
Darren M. Crayn et al.
JOURNAL OF BIOGEOGRAPHY (2015)
Three geographically separate domestications of Asian rice
Peter Civan et al.
NATURE PLANTS (2015)
Exploring genome characteristics and sequence quality without a reference
Jared T. Simpson
BIOINFORMATICS (2014)
InterProScan 5: genome-scale protein function classification
Philip Jones et al.
BIOINFORMATICS (2014)
The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication
Muhua Wang et al.
NATURE GENETICS (2014)
MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations
Michael S. Campbell et al.
PLANT PHYSIOLOGY (2014)
Australian Wild Rice Reveals Pre-Domestication Origin of Polymorphism Deserts in Rice Genome
Gopala S. Krishnan et al.
PLOS ONE (2014)
Rapid diversification of five Oryza AA genomes associated with rice adaptation
Qun-Jie Zhang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Disentangling Methodological and Biological Sources of Gene Tree Discordance on Oryza (Poaceae) Chromosome 3
Derrick J. Zwickl et al.
SYSTEMATIC BIOLOGY (2014)
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
Remco Bouckaert et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Chloroplast Genome of Novel Rice Germplasm Identified in Northern Australia
Marta Brozynska et al.
TROPICAL PLANT BIOLOGY (2014)
QUAST: quality assessment tool for genome assemblies
Alexey Gurevich et al.
BIOINFORMATICS (2013)
Infernal 1.1: 100-fold faster RNA homology searches
Eric P. Nawrocki et al.
BIOINFORMATICS (2013)
Conservation and utilization of African Oryza genetic resources
Peterson W. Wambugu et al.
RICE (2013)
Molecular relationships between Australian annual wild rice, Oryza meridionalis, and two related perennial forms
Masahiro Sotowa et al.
RICE (2013)
Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data
Yoshihiro Kawahara et al.
RICE (2013)
Exploiting sparseness in de novo genome assembly
Chengxi Ye et al.
BMC BIOINFORMATICS (2012)
Efficient de novo assembly of large genomes using compressed data structures
Jared T. Simpson et al.
GENOME RESEARCH (2012)
Domestication and geographic origin of Oryza sativa in China: insights from multilocus analysis of nucleotide variation of O. sativa and O. rufipogon
Xin Wei et al.
MOLECULAR ECOLOGY (2012)
Phylogeography of Asian wild rice, Oryza rufipogon: a genome-wide view
Pu Huang et al.
MOLECULAR ECOLOGY (2012)
A map of rice genome variation reveals the origin of cultivated rice
Xuehui Huang et al.
NATURE (2012)
jModelTest 2: more models, new heuristics and parallel computing
Diego Darriba et al.
NATURE METHODS (2012)
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
Fredrik Ronquist et al.
SYSTEMATIC BIOLOGY (2012)
SNP in starch biosynthesis genes associated with nutritional and functional properties of rice
Ardashir Kharabian-Masouleh et al.
SCIENTIFIC REPORTS (2012)
Chloroplast genome sequence confirms distinctness of Australian and Asian wild rice
Daniel L. E. Waters et al.
ECOLOGY AND EVOLUTION (2012)
Assemblathon 1: A competitive assessment of de novo short read assembly methods
Dent Earl et al.
GENOME RESEARCH (2011)
Testing for Ancient Admixture between Closely Related Populations
Eric Y. Durand et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Considering Transposable Element Diversification in De Novo Annotation Approaches
Timothee Flutre et al.
PLOS ONE (2011)
Molecular evidence for a single evolutionary origin of domesticated rice
Jeanmaire Molina et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Late Cretaceous origin of the rice tribe provides evidence for early diversification in Poaceae
V. Prasad et al.
NATURE COMMUNICATIONS (2011)
The iPlant collaborative: cyberinfrastructure for plant biology
Stephen A. Goff et al.
FRONTIERS IN PLANT SCIENCE (2011)
Biogeography of the grasses (Poaceae): a phylogenetic approach to reveal evolutionary history in geographical space and geological time
Yanis Bouchenak-Khelladi et al.
BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2010)
Phylogeny and biogeography of the rice tribe (Oryzeae): Evidence from combined analysis of 20 chloroplast fragments
Liang Tang et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2010)
Genome sequencing and analysis of the model grass Brachypodium distachyon
John P. Vogel et al.
NATURE (2010)
Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza
Jetty S. S. Ammiraju et al.
PLANT JOURNAL (2010)
A Draft Sequence of the Neandertal Genome
Richard E. Green et al.
SCIENCE (2010)
Consilience of genetics and archaeobotany in the entangled history of rice
Dorian Q. Fuller et al.
ARCHAEOLOGICAL AND ANTHROPOLOGICAL SCIENCES (2010)
Assessing the gene space in draft genomes
Genis Parra et al.
NUCLEIC ACIDS RESEARCH (2009)
Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes
Fei Lu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
The Evolutionary History of Ehrhartoideae, Oryzeae, and Oryza
Elizabeth A. Kellogg
RICE (2009)
The evolving story of rice evolution
Duncan A. Vaughan et al.
PLANT SCIENCE (2008)
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genornes
Genis Parra et al.
BIOINFORMATICS (2007)
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
P Schattner et al.
NUCLEIC ACIDS RESEARCH (2005)
Gene prediction with a hidden Markov model and a new intron submodel
Mario Stanke et al.
BIOINFORMATICS (2003)
A whole-genome assembly of Drosophila
EW Myers et al.
SCIENCE (2000)