4.7 Review

The seed microbiome: Origins, interactions, and impacts

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Ecology

Flowers and Wild Megachilid Bees Share Microbes

Quinn S. McFrederick et al.

MICROBIAL ECOLOGY (2017)

Review Immunology

Aquatic bacterial diversity: Magnitude, dynamics, and controlling factors

Sana Shafi et al.

MICROBIAL PATHOGENESIS (2017)

Article Microbiology

Terroir is a key driver of seed-associated microbial assemblages

Stephanie Klaedtke et al.

ENVIRONMENTAL MICROBIOLOGY (2016)

Editorial Material Plant Sciences

Disentangling the factors shaping microbiota composition across the plant holobiont

Stephane Hacquard

NEW PHYTOLOGIST (2016)

Review Genetics & Heredity

The Plant Microbiota: Systems-Level Insights and Perspectives

Daniel B. Muller et al.

ANNUAL REVIEW OF GENETICS, VOL 50 (2016)

Article Biotechnology & Applied Microbiology

Exploring potential bacterial and fungal biocontrol agents transmitted from seeds to sprouts of wheat

Yali Huang et al.

BIOLOGICAL CONTROL (2016)

Review Microbiology

Dissecting endophytic lifestyle along the parasitism/mutualism continuum in Arabidopsis

Philipp H. Fesel et al.

CURRENT OPINION IN MICROBIOLOGY (2016)

Review Microbiology

Plant growth-promoting bacterial endophytes

Gustavo Santoyo et al.

MICROBIOLOGICAL RESEARCH (2016)

Article Plant Sciences

Plant microbiota affects seed transmission of phytopathogenic microorganisms

Matthieu Barret et al.

MOLECULAR PLANT PATHOLOGY (2016)

Article Biology

Overseas seed dispersal by migratory birds

Duarte S. Viana et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2016)

Article Microbiology

Genomic Resource of Rice Seed Associated Bacteria

Samriti Midha et al.

FRONTIERS IN MICROBIOLOGY (2016)

Article Ecology

Vertebrate bacterial gut diversity: size also matters

Jean-Jacques Godon et al.

BMC ECOLOGY (2016)

Article Biotechnology & Applied Microbiology

Plant-microbe partnerships in 2020

Birgit Mitter et al.

MICROBIAL BIOTECHNOLOGY (2016)

Article Microbiology

Plants of the fynbos biome harbour host species-specific bacterial communities

Tsakani Miyambo et al.

FEMS MICROBIOLOGY LETTERS (2016)

Review Ecology

Maintenance of Plant Species Diversity by Pathogens

James D. Bever et al.

ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 46 (2015)

Review Plant Sciences

Greater than the sum of their parts: characterizing plant microbiomes at the community-level

Sarah L. Lebeis

CURRENT OPINION IN PLANT BIOLOGY (2015)

Review Biochemistry & Molecular Biology

Plant growth-promoting bacteria as inoculants in agricultural soils

Rocheli de Souza et al.

GENETICS AND MOLECULAR BIOLOGY (2015)

Article Ecology

Marked seasonal variation in the wild mouse gut microbiota

Corinne F. Maurice et al.

ISME JOURNAL (2015)

Review Biotechnology & Applied Microbiology

A review: what is the spermosphere and how can it be studied?

S. Schiltz et al.

JOURNAL OF APPLIED MICROBIOLOGY (2015)

Review Biology

Giving microbes their due - animal life in a microbially dominant world

Margaret J. McFall-Ngai

JOURNAL OF EXPERIMENTAL BIOLOGY (2015)

Article Biochemical Research Methods

An improved high throughput sequencing method for studying oomycete communities

Rumakanta Sapkota et al.

JOURNAL OF MICROBIOLOGICAL METHODS (2015)

Review Biochemistry & Molecular Biology

The Plant Microbiome at Work

Klaus Schlaeppi et al.

MOLECULAR PLANT-MICROBE INTERACTIONS (2015)

Review Plant Sciences

The importance of the microbiome of the plant holobiont

Philippe Vandenkoornhuyse et al.

NEW PHYTOLOGIST (2015)

Article Microbiology

The Soil Microbiome Influences Grapevine-Associated Microbiota

Iratxe Zarraonaindia et al.

Article Multidisciplinary Sciences

The effect of soil-borne pathogens depends on the abundance of host tree species

Yu Liu et al.

NATURE COMMUNICATIONS (2015)

Article Multidisciplinary Sciences

Microbial communities on flower surfaces act as signatures of pollinator visitation

Masayuki Ushio et al.

SCIENTIFIC REPORTS (2015)

Review Microbiology

Exploring the avian gut microbiota: current trends and future directions

David W. Waite et al.

FRONTIERS IN MICROBIOLOGY (2015)

Article Biotechnology & Applied Microbiology

Emergence Shapes the Structure of the Seed Microbiota

Matthieu Barret et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)

Review Microbiology

Microbiology of sugar-rich environments: diversity, ecology and system constraints

Bart Lievens et al.

ENVIRONMENTAL MICROBIOLOGY (2015)

Article Plant Sciences

Do pathogens limit the distributions of tropical trees across a rainfall gradient?

Erin R. Spear et al.

JOURNAL OF ECOLOGY (2015)

Review Environmental Sciences

Bacterial seed endophytes: genera, vertical transmission and interaction with plants

Sascha Truyens et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2015)

Article Microbiology

Comparative Gut Microbiota of 59 Neotropical Bird Species

Sarah M. Hird et al.

FRONTIERS IN MICROBIOLOGY (2015)

Article Environmental Sciences

Active and diverse rainwater bacteria collected at an inland site in spring and summer 2011

Byung Cheol Cho et al.

ATMOSPHERIC ENVIRONMENT (2014)

Article Agronomy

Phylogeny and evolution of plant pathogenic oomycetes-a global overview

Marco Thines

EUROPEAN JOURNAL OF PLANT PATHOLOGY (2014)

Article Multidisciplinary Sciences

Pathogens and insect herbivores drive rainforest plant diversity and composition

Robert Bagchi et al.

NATURE (2014)

Article Plant Sciences

Factors affecting host range in a generalist seed pathogen of semi-arid shrublands

Julie Beckstead et al.

PLANT ECOLOGY (2014)

Article Ecology

Vertical transmission of fungal endophytes is widespread in forbs

Susan Hodgson et al.

ECOLOGY AND EVOLUTION (2014)

Editorial Material Microbiology

The plant microbiome and its importance for plant and human health

Gabriele Berg et al.

FRONTIERS IN MICROBIOLOGY (2014)

Article Microbiology

Characterizing the avian gut microbiota: membership, driving influences, and potential function

David W. Waite et al.

FRONTIERS IN MICROBIOLOGY (2014)

Review Plant Sciences

Seed dormancy and germination - emerging mechanisms and new hypotheses

Hiroyuki Nonogaki

FRONTIERS IN PLANT SCIENCE (2014)

Review Plant Sciences

Structure and Functions of the Bacterial Microbiota of Plants

Davide Bulgarelli et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 64 (2013)

Article Biotechnology & Applied Microbiology

Bacillus subtilis and Enterobacter cloacae endophytes from healthy Theobroma cacao L. trees can systemically colonize seedlings and promote growth

Hianna Almeida Camara Leite et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2013)

Review Biotechnology & Applied Microbiology

Unravelling the bacterial diversity in the atmosphere

Isabella Gandolfi et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2013)

Article Microbiology

Diversity of the spinach (Spinacia oleracea) spermosphere and phyllosphere bacterial communities

Gabriela Lopez-Velasco et al.

FEMS MICROBIOLOGY LETTERS (2013)

Article Mycology

Oomycetes baited from streams in Tennessee 2010-2012

Sandesh K. Shrestha et al.

MYCOLOGIA (2013)

Review Agronomy

The root microbiota-a fingerprint in the soil?

Aleklett Kristin et al.

PLANT AND SOIL (2013)

Article Multidisciplinary Sciences

Bacterial Communities Associated with the Surfaces of Fresh Fruits and Vegetables

Jonathan W. Leff et al.

PLOS ONE (2013)

Article Multidisciplinary Sciences

Do Honeybees Shape the Bacterial Community Composition in Floral Nectar?

Yana Aizenberg-Gershtein et al.

PLOS ONE (2013)

Article Biology

Nectar bacteria, but not yeast, weaken a plant - pollinator mutualism

Rachel L. Vannette et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)

Review Biotechnology & Applied Microbiology

The plant microbiome

Thomas R. Turner et al.

GENOME BIOLOGY (2013)

Article Microbiology

Zooming-in on floral nectar: a first exploration of nectar-associated bacteria in wild plant communities

Sergio Alvarez-Perez et al.

FEMS MICROBIOLOGY ECOLOGY (2012)

Article Ecology

Non-systemic fungal endophytes of grasses

Salud Sanchez Marquez et al.

FUNGAL ECOLOGY (2012)

Review Physiology

Diversity and function of the avian gut microbiota

Kevin D. Kohl

JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMS AND ENVIRONMENTAL PHYSIOLOGY (2012)

Article Multidisciplinary Sciences

Dynamics of Seed-Borne Rice Endophytes on Early Plant Growth Stages

Pablo R. Hardoim et al.

PLOS ONE (2012)

Article Multidisciplinary Sciences

Soil Moisture and Fungi Affect Seed Survival in California Grassland Annual Plants

Erin A. Mordecai

PLOS ONE (2012)

Article Multidisciplinary Sciences

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

Noah Fierer et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biology

Phylogenetic relatedness predicts priority effects in nectar yeast communities

Kabir G. Peay et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)

Review Plant Sciences

The rhizosphere microbiome and plant health

Roeland L. Berendsen et al.

TRENDS IN PLANT SCIENCE (2012)

Article Biotechnology & Applied Microbiology

Investigation on diversity and population succession dynamics of indigenous bacteria of the maize spermosphere

Yang Liu et al.

WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY (2012)

Article Environmental Sciences

Bacterial communities in floral nectar

Svetlana Fridman et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2012)

Review Plant Sciences

Hidden Fungi, Emergent Properties: Endophytes and Microbiomes

Andrea Porras-Alfaro et al.

ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 49 (2011)

Article Microbiology

Colonization of cucumber seeds by bacteria during germination

Maya Ofek et al.

ENVIRONMENTAL MICROBIOLOGY (2011)

Article Chemistry, Applied

Metabolite profiling of barley: Influence of the malting process

Thomas Frank et al.

FOOD CHEMISTRY (2011)

Article Microbiology

Uncultured bacterial diversity in tropical maize (Zea mays L.) rhizosphere

Puneet Singh Chauhan et al.

JOURNAL OF BASIC MICROBIOLOGY (2011)

Article Plant Sciences

Composition of epiphytic bacterial communities differs on petals and leaves

R. R. Junker et al.

PLANT BIOLOGY (2011)

Review Biochemistry & Molecular Biology

What triggers grass endophytes to switch from mutualism to pathogenism?

Carla J. Eaton et al.

PLANT SCIENCE (2011)

Article Ecology

Canopy gaps decrease microbial densities and disease risk for a shade-intolerant tree species

Kurt O. Reinhart et al.

ACTA OECOLOGICA-INTERNATIONAL JOURNAL OF ECOLOGY (2010)

Article Biotechnology & Applied Microbiology

Transmission of Plant-Pathogenic Bacteria by Nonhost Seeds without Induction of an Associated Defense Reaction at Emergence

Armelle Darrasse et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)

Article Plant Sciences

Cheatgrass facilitates spillover of a seed bank pathogen onto native grass species

Julie Beckstead et al.

JOURNAL OF ECOLOGY (2010)

Article Plant Sciences

Virulence of soil-borne pathogens and invasion by Prunus serotina

Kurt O. Reinhart et al.

NEW PHYTOLOGIST (2010)

Article Plant Sciences

The quick and the deadly: growth vs virulence in a seed bank pathogen

Susan E. Meyer et al.

NEW PHYTOLOGIST (2010)

Article Plant Sciences

Leaf Blight Disease on the Invasive Grass Microstegium vimineum Caused by a Bipolaris sp.

Nathan M. Kleczewski et al.

PLANT DISEASE (2010)

Article Biology

Inhospitable sweetness: nectar filtering of pollinator-borne inocula leads to impoverished, phylogenetically clustered yeast communities

Carlos M. Herrera et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2010)

Article Plant Sciences

Yeasts in floral nectar: a quantitative survey

Carlos M. Herrera et al.

ANNALS OF BOTANY (2009)

Article Plant Sciences

Seed Pathology Progress in Academia and Industry

Gary P. Munkvold

Annual Review of Phytopathology (2009)

Article Biotechnology & Applied Microbiology

Phenotypic and genetic diversity of rice seed-associated bacteria and their role in pathogenicity and biological control

B. Cottyn et al.

JOURNAL OF APPLIED MICROBIOLOGY (2009)

Article Biotechnology & Applied Microbiology

Rice Seeds as Sources of Endophytic Bacteria

Hiroko Kaga et al.

MICROBES AND ENVIRONMENTS (2009)

Review Plant Sciences

Fungal endophytes: diversity and functional roles

R. J. Rodriguez et al.

NEW PHYTOLOGIST (2009)

Article Plant Sciences

Aquatic fungi and fungus-like organisms growing on seeds of 131 plant taxa

Bazyli Czeczuga et al.

NOVA HEDWIGIA (2009)

Review Plant Sciences

On the use of fungicides in ecological seed burial studies

Nadine Mitschunas et al.

SEED SCIENCE RESEARCH (2009)

Article Soil Science

Influence of host seed on metabolic activity of Enterobacter cloacae in the spermosphere

D. P. Roberts et al.

SOIL BIOLOGY & BIOCHEMISTRY (2009)

Article Biotechnology & Applied Microbiology

Temporal release of fatty acids and sugars in the spermosphere:: Impacts on Enterobacter cloacae-induced biological control

Sofia Windstam et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)

Article Biotechnology & Applied Microbiology

Differential interference with Pythium ultimum sporangial activation and germination by Enterobacter cloacae in the corn and cucumber spermospheres

Sofia Windstam et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)

Article Agriculture, Multidisciplinary

Metabolite Profiling of Germinating Rice Seeds

Xiao-Li Shu et al.

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2008)

Review Microbiology

Worlds within worlds: evolution of the vertebrate gut microbiota

Ruth E. Ley et al.

NATURE REVIEWS MICROBIOLOGY (2008)

Article Agriculture, Multidisciplinary

Leaf spot in elephantgrass in the Cerrado Region of Central Brazil caused by Bipolaris maydis

Maria Jose d'Avila Charchar et al.

PESQUISA AGROPECUARIA BRASILEIRA (2008)

Article Multidisciplinary Sciences

Evolutionary ecology of pungency in wild chilies

Joshua J. Tewksbury et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Ecology

Factors affecting Bromus tectorum seed bank carryover in western Utah

Duane C. Smith et al.

RANGELAND ECOLOGY & MANAGEMENT (2008)

Article Biotechnology & Applied Microbiology

Succession of bacterial communities during early plant development: Transition from seed to root and effect of compost amendment

Stefan J. Green et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)

Article Soil Science

Compost and manure mediated impacts on soilborne pathogens and soil quality

HM Darby et al.

SOIL SCIENCE SOCIETY OF AMERICA JOURNAL (2006)

Article Plant Sciences

Soil feedback and pathogen activity in Prunus serotina throughout its native range

KO Reinhart et al.

JOURNAL OF ECOLOGY (2005)

Review Mycology

The endophytic continuum

B Schulz et al.

MYCOLOGICAL RESEARCH (2005)

Article Environmental Sciences

Biodiversity and ecology of species of aquatic oomycetes in the Aue Lake and the River Fulda in Kassel (Hessen)

A Riethmüller et al.

ACTA HYDROCHIMICA ET HYDROBIOLOGICA (2005)

Article Biotechnology & Applied Microbiology

Grass seed infection following inundation with Pyrenophora semeniperda

RW Medd et al.

BIOCONTROL SCIENCE AND TECHNOLOGY (2005)

Article Biology

Development of negative feedback during successive growth cycles of black cherry

A Packer et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2004)

Article Plant Sciences

Impacts of naturally-occurring soil fungi on seeds of meadow plants

M Schafer et al.

PLANT ECOLOGY (2004)

Article Ecology

The influence of soil moisture on losses of buried seeds to fungi

M Schafer et al.

ACTA OECOLOGICA-INTERNATIONAL JOURNAL OF ECOLOGY (2003)

Review Plant Sciences

Review of the epidemiology and economic importance of Pyrenophora semeniperda

RW Medd et al.

AUSTRALASIAN PLANT PATHOLOGY (2003)

Article Biodiversity Conservation

Effects of fungal pathogens on seeds of native and exotic plants: a test using congeneric pairs

CS Blaney et al.

JOURNAL OF APPLIED ECOLOGY (2001)

Article Biotechnology & Applied Microbiology

Fatty acid competition as a mechanism by which Enterobacter cloacae suppresses Pythium ultimum sporangium germination and damping-off

K van Dijk et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)

Article Biotechnology & Applied Microbiology

Bacterial origin and community composition in the barley phytosphere as a function of habitat and presowing conditions

B Normander et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)

Article Multidisciplinary Sciences

Soil pathogens and spatial patterns of seedling mortality in a temperate tree

A Packer et al.

NATURE (2000)

Article Biotechnology & Applied Microbiology

Importance of pfkA for rapid growth of Enterobacter cloacae during colonization of crop seeds

DP Roberts et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)