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Chun-Kan Chen et al.
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Xinxian Deng et al.
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Suhas S. P. Rao et al.
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Ezgi Hacisuleyman et al.
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Fabiana Arieti et al.
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Daniel N. Wilson et al.
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Bernd Schuettengruber et al.
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E Quevillon et al.
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Boundaries between chromosomal domains of X inactivation and escape bind CTCF and lack CpG methylation during early development
GN Filippova et al.
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Yeast telomerase RNA: A flexible scaffold for protein subunits
DC Zappulla et al.
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A Kohlmaier et al.
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Polycomb group proteins Ring1A/B link ubiquitylation of histone H2A to heritable gene silencing and X inactivation
M de Napoles et al.
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J Silva et al.
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Chromosomal silencing and localization are mediated by different domains of Xist RNA
A Wutz et al.
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Sharp, an inducible cofactor that integrates nuclear receptor repression and activation
YH Shi et al.
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P Avner et al.
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