相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。ModelFinder: fast model selection for accurate phylogenetic estimates
Subha Kalyaanamoorthy et al.
NATURE METHODS (2017)
Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants
Pedro Humberto Castro et al.
SCIENTIFIC REPORTS (2017)
PhyD3: a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization
Lukasz Kreft et al.
BIOINFORMATICS (2017)
Ensembl Genomes 2016: more genomes, more complexity
Paul Julian Kersey et al.
NUCLEIC ACIDS RESEARCH (2016)
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
Enis Afgan et al.
NUCLEIC ACIDS RESEARCH (2016)
Are We There Yet? Reliably Estimating the Completeness of Plant Genome Sequences
Elisabeth Veeckman et al.
PLANT CELL (2016)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2015)
PLAZA 3.0: an access point for plant comparative genomics
Sebastian Proost et al.
NUCLEIC ACIDS RESEARCH (2015)
Assessing the Costs and Cost-Effectiveness of Genomic Sequencing
Kurt D. Christensen et al.
JOURNAL OF PERSONALIZED MEDICINE (2015)
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
David M. Emms et al.
GENOME BIOLOGY (2015)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
BioJS: an open source JavaScript framework for biological data visualization
John Gomez et al.
BIOINFORMATICS (2013)
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
Helga Thorvaldsdottir et al.
BRIEFINGS IN BIOINFORMATICS (2013)
The evolution of phenylpropanoid metabolism in the green lineage
Takayuki Tohge et al.
CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY (2013)
pico-PLAZA, a genome database of microbial photosynthetic eukaryotes
Klaas Vandepoele et al.
ENVIRONMENTAL MICROBIOLOGY (2013)
Phytozome: a comparative platform for green plant genomics
David M. Goodstein et al.
NUCLEIC ACIDS RESEARCH (2012)
i-ADHoRe 3.0-fast and sensitive detection of genomic homology in extremely large data sets
Sebastian Proost et al.
NUCLEIC ACIDS RESEARCH (2012)
Dissecting Plant Genomes with the PLAZA Comparative Genomics Platform
Michiel Van Bel et al.
PLANT PHYSIOLOGY (2012)
Jalview Version 2-a multiple sequence alignment editor and analysis workbench
Andrew M. Waterhouse et al.
BIOINFORMATICS (2009)
phyloXML: XML for evolutionary biology and comparative genomics
Mira V. Han et al.
BMC BIOINFORMATICS (2009)
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
Morgan N. Price et al.
MOLECULAR BIOLOGY AND EVOLUTION (2009)
PLAZA: A Comparative Genomics Resource to Study Gene and Genome Evolution in Plants
Sebastian Proost et al.
PLANT CELL (2009)
Perspective - Synteny and collinearity in plant genomes
Haibao Tang et al.
SCIENCE (2008)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
L Li et al.
GENOME RESEARCH (2003)
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
K Katoh et al.
NUCLEIC ACIDS RESEARCH (2002)