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ZetaHunter, a Reproducible Taxonomic Classification Tool for Tracking the Ecology of the Zetaproteobacteria and Other Poorly Resolved Taxa

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AMER SOC MICROBIOLOGY
DOI: 10.1128/MRA.00932-18

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  1. National Science Foundation (NSF) [OCE-1155290]
  2. Agriculture and Food Research Initiative from the USDA National Institute of Food and Agriculture [2012-68003-30155]
  3. Delaware INBRE [NIH P20 GM103446]
  4. Delaware Biotechnology Institute

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Like many taxa, the Zetaproteobacteria lack well-defined taxonomic divisions, making it difficult to compare them between studies. We designed ZetaHunter to reproducibly assign 16S rRNA gene sequences to previously described operational taxonomic units (OTUs) based on a curated database. While ZetaHunter can use any given database, we included a curated classification of publicly available Zetaproteobacteria.

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