相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Shift in fungal communities and associated enzyme activities along an age gradient of managed Pinus sylvestris stands
Julia Kyaschenko et al.
ISME JOURNAL (2017)
PipeCraft: Flexible open-source toolkit for bioinformatics analysis of custom high-throughput amplicon sequencing data
Sten Anslan et al.
MOLECULAR ECOLOGY RESOURCES (2017)
A novel ultra high-throughput 16S rRNA gene amplicon sequencing library preparation method for the Illumina HiSeq platform
Eric J. de Muinck et al.
MICROBIOME (2017)
Novel soil-inhabiting clades fill gaps in the fungal tree of life
Leho Tedersoo et al.
MICROBIOME (2017)
Examining Sources of Error in PCR by Single-Molecule Sequencing
Vladimir Potapov et al.
PLOS ONE (2017)
Identification of Putative Coffee Rust Mycoparasites via Single-Molecule DNA Sequencing of Infected Pustules
Timothy Y. James et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)
Third generation sequencing: technology and its potential impact on evolutionary biodiversity research
Christoph Bleidorn
SYSTEMATICS AND BIODIVERSITY (2016)
Unbiased probabilistic taxonomic classification for DNA barcoding
Panu Somervuo et al.
BIOINFORMATICS (2016)
A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling
Rosalinda D'Amore et al.
BMC GENOMICS (2016)
Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification
Josef Wagner et al.
BMC MICROBIOLOGY (2016)
High-resolution phylogenetic microbial community profiling
Esther Singer et al.
ISME JOURNAL (2016)
Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies
Daryl M. Gohl et al.
NATURE BIOTECHNOLOGY (2016)
High-resolution community profiling of arbuscular mycorrhizal fungi
Klaus Schlaeppi et al.
NEW PHYTOLOGIST (2016)
Digital identifiers for fungal species
U. Koljalg et al.
SCIENCE (2016)
Fungal identification biases in microbiome projects
Leho Tedersoo et al.
ENVIRONMENTAL MICROBIOLOGY REPORTS (2016)
Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system
Patrick D. Schloss et al.
PEERJ (2016)
Oomycete-specific ITS primers for identification and metabarcoding
Taavi Riit et al.
MYCOKEYS (2016)
Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes
Miklos Balint et al.
FEMS MICROBIOLOGY REVIEWS (2016)
One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly
Sergey Koren et al.
CURRENT OPINION IN MICROBIOLOGY (2015)
Polymerase matters: non-proofreading enzymes inflate fungal community richness estimates by up to 15 %
Alena K. Oliver et al.
FUNGAL ECOLOGY (2015)
Scraping the bottom of the barrel: are rare high throughput sequences artifacts?
Shawn P. Brown et al.
FUNGAL ECOLOGY (2015)
High-Throughput Sequencing Technologies
Jason A. Reuter et al.
MOLECULAR CELL (2015)
Initial colonization, community assembly and ecosystem function: fungal colonist traits and litter biochemistry mediate decay rate
Lauren C. Cline et al.
MOLECULAR ECOLOGY (2015)
Response to Comment on Global diversity and geography of soil fungi
Leho Tedersoo et al.
SCIENCE (2015)
High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats
Jizhong Zhou et al.
MBIO (2015)
Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi
Leho Tedersoo et al.
MycoKeys (2015)
PacBio Sequencing and Its Applications
Anthony Rhoads et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2015)
Parsing ecological signal from noise in next generation amplicon sequencing
Nhu H. Nguyen et al.
NEW PHYTOLOGIST (2015)
Why are some microbes more ubiquitous than others? Predicting the habitat breadth of soil bacteria
Albert Barberan et al.
ECOLOGY LETTERS (2014)
Global diversity and geography of soil fungi
Leho Tedersoo et al.
SCIENCE (2014)
Comparison of ITS1 and ITS2 rDNA in 454 sequencing of hyperdiverse fungal communities
Anna L. Bazzicalupo et al.
FUNGAL ECOLOGY (2013)
Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide
Bjorn D. Lindahl et al.
NEW PHYTOLOGIST (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Towards a unified paradigm for sequence-based identification of fungi
Urmas Koljalg et al.
MOLECULAR ECOLOGY (2013)
ITS1 versus ITS2 as DNA metabarcodes for fungi
R. Blaalid et al.
MOLECULAR ECOLOGY RESOURCES (2013)
Practical innovations for high-throughput amplicon sequencing
Derek S. Lundberg et al.
NATURE METHODS (2013)
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Christian Quast et al.
NUCLEIC ACIDS RESEARCH (2013)
Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi
Daniel L. Lindner et al.
ECOLOGY AND EVOLUTION (2013)
Accurate, Rapid Taxonomic Classification of Fungal Large-Subunit rRNA Genes
Kuan-Liang Liu et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
CD-HIT: accelerated for clustering the next-generation sequencing data
Limin Fu et al.
BIOINFORMATICS (2012)
A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers
Michael A. Quail et al.
BMC GENOMICS (2012)
New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities
Katarina Ihrmark et al.
FEMS MICROBIOLOGY ECOLOGY (2012)
Don't make a mista(g)ke: is tag switching an overlooked source of error in amplicon pyrosequencing studies?
Tor Carlsen et al.
FUNGAL ECOLOGY (2012)
UCHIME improves sensitivity and speed of chimera detection
Robert C. Edgar et al.
BIOINFORMATICS (2011)
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
Brian J. Haas et al.
GENOME RESEARCH (2011)
Archaeorhizomycetes: Unearthing an Ancient Class of Ubiquitous Soil Fungi
Anna Rosling et al.
SCIENCE (2011)
Insidious effects of sequencing errors on perceived diversity in molecular surveys
Ian A. Dickie
NEW PHYTOLOGIST (2010)
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
Patrick D. Schloss et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
DNA-based species level detection of Glomeromycota: one PCR primer set for all arbuscular mycorrhizal fungi
Manuela Krueger et al.
NEW PHYTOLOGIST (2009)
A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes
Linda A. Amaral-Zettler et al.
PLOS ONE (2009)
Real-Time DNA Sequencing from Single Polymerase Molecules
John Eid et al.
SCIENCE (2009)
Improved PCR primers for the detection and identification of arbuscular mycorrhizal fungi
Jaikoo Lee et al.
FEMS MICROBIOLOGY ECOLOGY (2008)
A Rapid Bootstrap Algorithm for the RAxML Web Servers
Alexandros Stamatakis et al.
SYSTEMATIC BIOLOGY (2008)
Reconstructing the early evolution of Fungi using a six-gene phylogeny
Timothy Y. James et al.
NATURE (2006)
分享论文
