4.7 Review

Ten principles of heterochromatin formation and function

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Genetics & Heredity

An Evolutionary Perspective on Yeast Mating-Type Switching

Sara J. Hanson et al.

GENETICS (2017)

Article Multidisciplinary Sciences

Phase separation drives heterochromatin domain formation

Amy R. Strom et al.

NATURE (2017)

Article Multidisciplinary Sciences

KRAB zinc-finger proteins contribute to the evolution of gene regulatory networks

Michael Imbeault et al.

NATURE (2017)

Review Biochemistry & Molecular Biology

Novel players in X inactivation: insights into Xist-mediated gene silencing and chromosome conformation

Simao T. da Rocha et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)

Article Multidisciplinary Sciences

Propagation of Polycomb-repressed chromatin requires sequence-specific recruitment to DNA

Friederike Laprell et al.

SCIENCE (2017)

Article Multidisciplinary Sciences

The conserved protein Seb1 drives transcription termination by binding RNA polymerase II and nascent RNA

Sina Wittmann et al.

NATURE COMMUNICATIONS (2017)

Review Biochemistry & Molecular Biology

Novel players in X inactivation: insights into Xist-mediated gene silencing and chromosome conformation

Simao T. da Rocha et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)

Review Genetics & Heredity

An Evolutionary Perspective on Yeast Mating-Type Switching

Sara J. Hanson et al.

GENETICS (2017)

Review Cell Biology

Metabolic Inputs into the Epigenome

Upasna Sharma et al.

CELL METABOLISM (2017)

Review Cell Biology

The molecular basis for centromere identity and function

Kara L. McKinley et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2016)

Review Biophysics

Mechanisms of ATP-Dependent Chromatin Remodeling Motors

Coral Y. Zhou et al.

ANNUAL REVIEW OF BIOPHYSICS, VOL 45 (2016)

Review Biochemistry & Molecular Biology

Position-effect variegation revisited: HUSHing up heterochromatin in human cells

Richard T. Timms et al.

BIOESSAYS (2016)

Article Biochemistry & Molecular Biology

Inheritable Silencing of Endogenous Genes by Hit-and-Run Targeted Epigenetic Editing

Angelo Amabile et al.

Article Biochemistry & Molecular Biology

Trim28 Haploinsufficiency Triggers Bi-stable Epigenetic Obesity

Kevin Dalgaard et al.

Article Biochemistry & Molecular Biology

Human centromere repositioning within euchromatin after partial chromosome deletion

Lori L. Sullivan et al.

CHROMOSOME RESEARCH (2016)

Review Biochemistry & Molecular Biology

New Xist-Interacting Proteins in X-Chromosome Inactivation

Hegias Mira-Bontenbal et al.

CURRENT BIOLOGY (2016)

Article Biochemistry & Molecular Biology

Survival in Quiescence Requires the Euchromatic Deployment of Clr4/SUV39H by Argonaute-Associated Small RNAs

Richard I. Joh et al.

MOLECULAR CELL (2016)

Article Biochemistry & Molecular Biology

Distinct Functions of Argonaute Slicer in siRNA Maturation and Heterochromatin Formation

Ruchi Jain et al.

MOLECULAR CELL (2016)

Article Biochemistry & Molecular Biology

Temporal and Spatial Uncoupling of DNA Double Strand Break Repair Pathways within Mammalian Heterochromatin

Katerina Tsouroula et al.

MOLECULAR CELL (2016)

Review Cell Biology

SMC complexes: from DNA to chromosomes

Frank Uhlmann

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2016)

Article Multidisciplinary Sciences

Generalized nucleation and looping model for epigenetic memory of histone modifications

Fabian Erdel et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Multidisciplinary Sciences

Dynamics of epigenetic regulation at the single-cell level

Lacramioara Bintu et al.

SCIENCE (2016)

Review Genetics & Heredity

H3K9me3-Dependent Heterochromatin: Barrier to Cell Fate Changes

Justin S. Becker et al.

TRENDS IN GENETICS (2016)

Article Multidisciplinary Sciences

Nucleation and spreading of a heterochromatic domain in fission yeast

Michaela J. Obersriebnig et al.

NATURE COMMUNICATIONS (2016)

Review Cell Biology

Metabolism and Epigenetics

Ryan Janke et al.

ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, VOL 31 (2015)

Article Biochemistry & Molecular Biology

Product Binding Enforces the Genomic Specificity of a Yeast Polycomb Repressive Complex

Phillip A. Dumesic et al.

Article Biochemistry & Molecular Biology

A One Precursor One siRNA Model for Pol IV-Dependent siRNA Biogenesis

Jixian Zhai et al.

Article Biochemistry & Molecular Biology

Systematic Discovery of Xist RNA Binding Proteins

Ci Chu et al.

Article Genetics & Heredity

What Do You Mean, Epigenetic?

Carrie Deans et al.

GENETICS (2015)

Article Multidisciplinary Sciences

The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3

Colleen A. McHugh et al.

NATURE (2015)

Article Multidisciplinary Sciences

The Paf1 complex represses small-RNA-mediated epigenetic gene silencing

Katarzyna Maria Kowalik et al.

NATURE (2015)

Article Multidisciplinary Sciences

The histone chaperone CAF-1 safeguards somatic cell identity

Sihem Cheloufi et al.

NATURE (2015)

Review Cell Biology

DNA methylation pathways and their crosstalk with histone methylation

Jiamu Du et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2015)

Article Multidisciplinary Sciences

Epigenetic silencing by the HUSH complex mediates position-effect variegation in human cells

Iva A. Tchasovnikarova et al.

SCIENCE (2015)

Article Multidisciplinary Sciences

Restricted epigenetic inheritance of H3K9 methylation

Pauline N. C. B. Audergon et al.

SCIENCE (2015)

Article Genetics & Heredity

What Do You Mean, Epigenetic?

Carrie Deans et al.

GENETICS (2015)

Article Multidisciplinary Sciences

Intracellular α-ketoglutarate maintains the pluripotency of embryonic stem cells

Bryce W. Carey et al.

NATURE (2015)

Article Multidisciplinary Sciences

Epigenetic inheritance uncoupled from sequence-specific recruitment

Kaushik Ragunathan et al.

SCIENCE (2015)

Article Biochemistry & Molecular Biology

Molecular Mechanism of Action of Plant DRM De Novo DNA Methyltransferases

Xuehua Zhong et al.

Review Developmental Biology

piRNAs: from biogenesis to function

Eva-Maria Weick et al.

DEVELOPMENT (2014)

Article Cell Biology

Evolutionally dynamic L1 regulation in embryonic stem cells

Nathaly Castro-Diaz et al.

GENES & DEVELOPMENT (2014)

Article Biochemistry & Molecular Biology

DNA methylation profiling in X;autosome translocations supports a role for L1 repeats in the spread of X chromosome inactivation

Neeta Bala Tannan et al.

HUMAN MOLECULAR GENETICS (2014)

Article Biochemistry & Molecular Biology

The Mi-2 Homolog Mit1 Actively Positions Nucleosomes within Heterochromatin To Suppress Transcription

Kevin M. Creamer et al.

MOLECULAR AND CELLULAR BIOLOGY (2014)

Article Biochemistry & Molecular Biology

A Two-Step Process for Epigenetic Inheritance in Arabidopsis

Todd Blevins et al.

MOLECULAR CELL (2014)

Article Biochemistry & Molecular Biology

Determinants of Heterochromatic siRNA Biogenesis and Function

Ruby Yu et al.

MOLECULAR CELL (2014)

Article Multidisciplinary Sciences

An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons

Frank M. J. Jacobs et al.

NATURE (2014)

Review Genetics & Heredity

SIR Proteins and the Assembly of Silent Chromatin in Budding Yeast

Stephanie Kueng et al.

ANNUAL REVIEW OF GENETICS, VOL 47 (2013)

Article Biochemistry & Molecular Biology

Distinct roles for Sir2 and RNAi in centromeric heterochromatin nucleation, spreading and maintenance

Alessia Buscaino et al.

EMBO JOURNAL (2013)

Article Multidisciplinary Sciences

RNAi triggered by specialized machinery silences developmental genes and retrotransposons

Soichiro Yamanaka et al.

NATURE (2013)

Article Multidisciplinary Sciences

Translating dosage compensation to trisomy 21

Jun Jiang et al.

NATURE (2013)

Article Multidisciplinary Sciences

Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1

Julie A. Law et al.

NATURE (2013)

Article Genetics & Heredity

H3K9 methylation is a barrier during somatic cell reprogramming into iPSCs

Jiekai Chen et al.

NATURE GENETICS (2013)

Article Genetics & Heredity

Reconstructing de novo silencing of an active plant retrotransposon

Arturo Mari-Ordonez et al.

NATURE GENETICS (2013)

Article Biochemistry & Molecular Biology

HDAC-mediated suppression of histone turnover promotes epigenetic stability of heterochromatin

Ozan Ayguen et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)

Article Multidisciplinary Sciences

DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV

Heng Zhang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Cell Biology

Position-Effect Variegation, Heterochromatin Formation, and Gene Silencing in Drosophila

Sarah C. R. Elgin et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Dynamics and Memory of Heterochromatin in Living Cells

Nathaniel A. Hathaway et al.

Article Biochemistry & Molecular Biology

Human tRNA genes function as chromatin insulators

Jesse R. Raab et al.

EMBO JOURNAL (2012)

Review Cell Biology

Chromatin replication and epigenome maintenance

Constance Alabert et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2012)

Article Multidisciplinary Sciences

Heterochromatin protein 1 homologue Swi6 acts in concert with Ers1 to regulate RNAi-directed heterochromatin assembly

Aki Hayashi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Ers1 links HP1 to RNAi

Mathieu Rougemaille et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemistry & Molecular Biology

Defects in RNA quality control factors reveal RNAi-independent nucleation of heterochromatin

Francisca E. Reyes-Turcu et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2011)

Article Biochemistry & Molecular Biology

Stc1: A Critical Link between RNAi and Chromatin Modification Required for Heterochromatin Integrity

Elizabeth H. Bayne et al.

Article Biochemistry & Molecular Biology

Dicer-Independent Primal RNAs Trigger RNAi and Heterochromatin Formation

Mario Halic et al.

Article Biochemistry & Molecular Biology

Hairpin RNA induces secondary small interfering RNA synthesis and silencing in trans in fission yeast

Femke Simmer et al.

EMBO REPORTS (2010)

Article Biochemistry & Molecular Biology

The Methyltransferase Activity of Clr4Suv39h Triggers RNAi Independently of Histone H3K9 Methylation

Erica L. Gerace et al.

MOLECULAR CELL (2010)

Article Biochemistry & Molecular Biology

Mechanisms that Specify Promoter Nucleosome Location and Identity

Paul D. Hartley et al.

Article Cell Biology

Hierarchical Inactivation of a Synthetic Human Kinetochore by a Chromatin Modifier

Stefano Cardinale et al.

MOLECULAR BIOLOGY OF THE CELL (2009)

Article Multidisciplinary Sciences

Embryonic stem cells use ZFP809 to silence retroviral DNAs

Daniel Wolf et al.

NATURE (2009)

Article Multidisciplinary Sciences

Role of the polycomb protein EED in the propagation of repressive histone marks

Raphael Margueron et al.

NATURE (2009)

Article Genetics & Heredity

RNA polymerase V transcription guides ARGONAUTE4 to chromatin

Andrzej T. Wierzbicki et al.

NATURE GENETICS (2009)

Review Genetics & Heredity

OPINION Rethinking how DNA methylation patterns are maintained

Peter A. Jones et al.

NATURE REVIEWS GENETICS (2009)

Article Multidisciplinary Sciences

Diverse roles of HP1 proteins in heterochromatin assembly and functions in fission yeast

Tamas Fischer et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biochemistry & Molecular Biology

RNA interference guides histone modification during the S phase of chromosomal replication

Anna Kloc et al.

CURRENT BIOLOGY (2008)

Article Cell Biology

Inactivation of a human kinetochore by specific targeting of chromatin modifiers

Megumi Nakano et al.

DEVELOPMENTAL CELL (2008)

Article Biochemistry & Molecular Biology

Ers1, a rapidly diverging protein essential for RNA interference-dependent heterochromatic silencing in Schizosaccharomyces pombe

Mathieu Rougemaille et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2008)

Article Biochemistry & Molecular Biology

siRNA-Mediated heterochromatin establishment requires HP1 and is associated with antisense transcription

Tetsushi Iida et al.

MOLECULAR CELL (2008)

Article Biochemistry & Molecular Biology

HP1 Proteins Form Distinct Complexes and Mediate Heterochromatic Gene Silencing by Nonoverlapping Mechanisms

Mohammad R. Motamedi et al.

MOLECULAR CELL (2008)

Article Biochemistry & Molecular Biology

A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice

Alexei A. Aravin et al.

MOLECULAR CELL (2008)

Article Multidisciplinary Sciences

Cell cycle control of centromeric repeat transcription and heterochromatin assembly

Ee Sin Chen et al.

NATURE (2008)

Article Biochemistry & Molecular Biology

Roles of the Clr4 methyltransferase complex in nucleation, spreading and maintenance of heterochromatin

Ke Zhang et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2008)

Article Multidisciplinary Sciences

Heterochromatin and RNAi are required to establish CENP-A chromatin at centromeres

Hernan Diego Folco et al.

SCIENCE (2008)

Article Biochemistry & Molecular Biology

The JmjC domain protein Epe1 prevents unregulated assembly and disassembly of heterochromatin

Sarah C. Trewick et al.

EMBO JOURNAL (2007)

Article Multidisciplinary Sciences

Genome-wide, as opposed to local, antisilencing is mediated redundantly by the euchromatic factors Set1 and H2A.Z

Shivkumar Venkatasubrahmanyam et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemistry & Molecular Biology

Coupling of double-stranded RNA synthesis and siRNA generation in fission yeast RNAi

Serafin U. Colmenares et al.

MOLECULAR CELL (2007)

Article Biochemistry & Molecular Biology

The kinetochore proteins Pcs1 and Mde4 and heterochromatin are required to prevent merotelic orientation

Juraj Gregan et al.

CURRENT BIOLOGY (2007)

Article Biochemistry & Molecular Biology

Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila

Julius Brennecke et al.

Article Biochemistry & Molecular Biology

SHREC, an effector complex for heterochromatic transcriptional silencing

Tomoyasu Sugiyama et al.

Article Biochemistry & Molecular Biology

Swi6/HP1 recruits a JmjC domain protein to facilitate transcription of heterochromatic repeats

Martin Zofall et al.

MOLECULAR CELL (2006)

Article Biochemistry & Molecular Biology

A role for TFIIIC transcription factor complex in genome organization

Ken-ichi Noma et al.

Article Multidisciplinary Sciences

Attenuated spread of X-inactivation in an X;autosome translocation

Bilyana C. Popova et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

A heterochromatin barrier partitions the fission yeast centromere into discrete chromatin domains

KC Scott et al.

CURRENT BIOLOGY (2006)

Article Biochemistry & Molecular Biology

The nucleation and maintenance of heterochromatin by a histone deacetylase in fission yeast

T Yamada et al.

MOLECULAR CELL (2005)

Article Biochemistry & Molecular Biology

Telomere binding protein Taz1 establishes Swi6 heterochromatin independently of RNAi at telomeres

J Kanoh et al.

CURRENT BIOLOGY (2005)

Article Multidisciplinary Sciences

RNA polymerase II is required for RNAi-dependent heterochromatin assembly

H Kato et al.

SCIENCE (2005)

Review Biochemistry & Molecular Biology

Methylation: lost in hydroxylation?

SC Trewick et al.

EMBO REPORTS (2005)

Article Multidisciplinary Sciences

RNA polymerase IV directs silencing of endogenous DNA

AJ Herr et al.

SCIENCE (2005)

Article Multidisciplinary Sciences

RNA-dependent RNA polymerase is an essential component of a self-enforcing loop coupling heterochromatin assembly to siRNA production

T Sugiyama et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

HP1 is essential for DNA methylation in Neurospora

M Freitag et al.

MOLECULAR CELL (2004)

Article Multidisciplinary Sciences

RNAi-mediated targeting of heterochromatin by the RITS complex

A Verdel et al.

SCIENCE (2004)

Article Biochemistry & Molecular Biology

Methylation of H3 lysine 4 at euchromatin promotes Sir3p association with heterochromatin

H Santos-Rosa et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2004)

Article Biochemistry & Molecular Biology

A novel jmjC domain protein modulates heterochromatization in fission yeast

N Ayoub et al.

MOLECULAR AND CELLULAR BIOLOGY (2003)

Article Genetics & Heredity

The role of DNA methylation in setting up chromatin structure during development

T Hashimshony et al.

NATURE GENETICS (2003)

Article Multidisciplinary Sciences

Role of histone H3 lysine 27 methylation in polycomb-group silencing

R Cao et al.

SCIENCE (2002)

Article Biochemistry & Molecular Biology

Histone methyltransferase activity of a Drosophila polycomb group repressor complex

J Müller et al.

Article Multidisciplinary Sciences

Establishment and maintenance of a heterochromatin domain

IM Hall et al.

SCIENCE (2002)

Article Multidisciplinary Sciences

Small RNAs correspond to centromere heterochromatic repeats

BJ Reinhart et al.

SCIENCE (2002)

Article Biochemistry & Molecular Biology

Dot1p modulates silencing in yeast by methylation of the nucleosome core

F van Leeuwen et al.

Article Multidisciplinary Sciences

Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase

JP Jackson et al.

NATURE (2002)

Article Multidisciplinary Sciences

Requirement of heterochromatin for cohesion at centromeres

P Bernard et al.

SCIENCE (2001)

Article Multidisciplinary Sciences

A histone H3 methyltransferase controls DNA methylation in Neurospora crassa

H Tamaru et al.

NATURE (2001)

Article Multidisciplinary Sciences

Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain

AJ Bannister et al.

NATURE (2001)

Article Multidisciplinary Sciences

Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins

M Lachner et al.

NATURE (2001)