4.8 Article

Lineage-specific dynamic and pre-established enhancer-promoter contacts cooperate in terminal differentiation

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Cell & Tissue Engineering

3D Chromosome Regulatory Landscape of Human Pluripotent Cells

Xiong Ji et al.

CELL STEM CELL (2016)

Article Cell & Tissue Engineering

Dnmt3a and Dnmt3b Associate with Enhancers to Regulate Human Epidermal Stem Cell Homeostasis

Lorenzo Rinaldi et al.

CELL STEM CELL (2016)

Review Biochemistry & Molecular Biology

Chromatin Domains: The Unit of Chromosome Organization

Jesse R. Dixon et al.

MOLECULAR CELL (2016)

Article Biochemical Research Methods

UMI-4C for quantitative and targeted chromosomal contact profiling

Omer Schwartzman et al.

NATURE METHODS (2016)

Article Biotechnology & Applied Microbiology

CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data

Jonathan Cairns et al.

GENOME BIOLOGY (2016)

Article Biochemical Research Methods

FourCSeq: analysis of 4C sequencing data

Felix A. Klein et al.

BIOINFORMATICS (2015)

Article Cell Biology

A LncRNA-MAF:MAFB Transcription Factor Network Regulates Epidermal Differentiation

Vanessa Lopez-Pajares et al.

DEVELOPMENTAL CELL (2015)

Article Biochemistry & Molecular Biology

The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements

Stefan Schoenfelder et al.

GENOME RESEARCH (2015)

Article Multidisciplinary Sciences

Chromatin architecture reorganization during stem cell differentiation

Jesse R. Dixon et al.

NATURE (2015)

Article Multidisciplinary Sciences

Integrative analysis of 111 reference human epigenomes

Anshul Kundaje et al.

NATURE (2015)

Article Genetics & Heredity

Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C

Borbala Mifsud et al.

NATURE GENETICS (2015)

Article Biotechnology & Applied Microbiology

HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

Nicolas Servant et al.

GENOME BIOLOGY (2015)

Article Biochemistry & Molecular Biology

A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

Suhas S. P. Rao et al.

Article Biochemistry & Molecular Biology

Control of Cell Identity Genes Occurs in Insulated Neighborhoods in Mammalian Chromosomes

Jill M. Dowen et al.

Article Biochemistry & Molecular Biology

Ets homologous factor regulates pathways controlling response to injury in airway epithelial cells

Sara L. Fossum et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Multidisciplinary Sciences

Convergent evolution of complex regulatory landscapes and pleiotropy at Hox loci

Nicolas Lonfat et al.

SCIENCE (2014)

Article Biochemistry & Molecular Biology

Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment

Jennifer E. Phillips-Cremins et al.

Article Multidisciplinary Sciences

Control of somatic tissue differentiation by the long non-coding RNA TINCR

Markus Kretz et al.

NATURE (2013)

Article Biochemistry & Molecular Biology

Foxp3 Exploits a Pre-Existent Enhancer Landscape for Regulatory T Cell Lineage Specification

Robert M. Samstein et al.

Article Biochemistry & Molecular Biology

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Stephen G. Landt et al.

GENOME RESEARCH (2012)

Review Genetics & Heredity

Transcription factors: from enhancer binding to developmental control

Francois Spitz et al.

NATURE REVIEWS GENETICS (2012)

Article Biochemistry & Molecular Biology

A Regulatory Archipelago Controls Hox Genes Transcription in Digits

Thomas Montavon et al.

Article Multidisciplinary Sciences

A unique chromatin signature uncovers early developmental enhancers in humans

Alvaro Rada-Iglesias et al.

NATURE (2011)

Article Biochemical Research Methods

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson et al.

BIOINFORMATICS (2010)

Article Multidisciplinary Sciences

Mediator and cohesin connect gene expression and chromatin architecture

Michael H. Kagey et al.

NATURE (2010)

Article Multidisciplinary Sciences

Histone H3K27ac separates active from poised enhancers and predicts developmental state

Menno P. Creyghton et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemical Research Methods

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

Da Wei Huang et al.

NATURE PROTOCOLS (2009)