4.8 Article

Rational design of proteins that exchange on functional timescales

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

Principles for designing proteins with cavities formed by curved β sheets

Enrique Marcos et al.

SCIENCE (2017)

Article Biochemistry & Molecular Biology

The role of protein dynamics in the evolution of new enzyme function

Eleanor Campbell et al.

NATURE CHEMICAL BIOLOGY (2016)

Article Biochemistry & Molecular Biology

The energy landscape of adenylate kinase during catalysis

S. Jordan Kerns et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)

Article Biochemistry & Molecular Biology

Prediction of Stable Globular Proteins Using Negative Design with Non-native Backbone Ensembles

James A. Davey et al.

STRUCTURE (2015)

Article Biochemistry & Molecular Biology

The energy landscape of adenylate kinase during catalysis

S. Jordan Kerns et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)

Article Multidisciplinary Sciences

Protein design algorithms predict viable resistance to an experimental antifolate

Stephanie M. Reeve et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Biochemistry & Molecular Biology

Improving the accuracy of protein stability predictions with multistate design using a variety of backbone ensembles

James A. Davey et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2014)

Article Multidisciplinary Sciences

Principles for designing ideal protein structures

Nobuyasu Koga et al.

NATURE (2012)

Article Multidisciplinary Sciences

Iterative approach to computational enzyme design

Heidi K. Privett et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemical Research Methods

Computational Design of a PDZ Domain Peptide Inhibitor that Rescues CFTR Activity

Kyle E. Roberts et al.

PLOS COMPUTATIONAL BIOLOGY (2012)

Review Biochemistry & Molecular Biology

An introduction to NMR-based approaches for measuring protein dynamics

Ian R. Kleckner et al.

BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2011)

Article Multidisciplinary Sciences

Solution structure of a minor and transiently formed state of a T4 lysozyme mutant

Guillaume Bouvignies et al.

NATURE (2011)

Article Multidisciplinary Sciences

Ultrahigh resolution protein structures using NMR chemical shift tensors

Benjamin J. Wylie et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Biochemistry & Molecular Biology

Role of conformational sampling in computing mutation-induced changes in protein structure and stability

Elizabeth H. Kellogg et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

RosettaBackrub-a web server for flexible backbone protein structure modeling and design

Florian Lauck et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Multidisciplinary Sciences

Experimental library screening demonstrates the successful application of computational protein design to large structural ensembles

Benjamin D. Allen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Generation of longer emission wavelength red fluorescent proteins using computationally designed libraries

Roberto A. Chica et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemistry & Molecular Biology

Structural origins of pH-dependent chemical shifts in the B1 domain of protein G

Jennifer H. Tomlinson et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

Two-point anchoring of a lanthanide-binding peptide to a target protein enhances the paramagnetic anisotropic effect

Tomohide Saio et al.

JOURNAL OF BIOMOLECULAR NMR (2009)

Article Biochemistry & Molecular Biology

TALOS plus : a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts

Yang Shen et al.

JOURNAL OF BIOMOLECULAR NMR (2009)

Article Multidisciplinary Sciences

Dynamic activation of an allosteric regulatory protein

Shiou-Ru Tzeng et al.

NATURE (2009)

Article Biochemistry & Molecular Biology

Protonate3D: Assignment of ionization states and hydrogen coordinates to macromolecular structures

Paul Labute

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)

Article Multidisciplinary Sciences

Interconversion between two unrelated protein folds in the lymphotactin native state

Robbyn L. Tuinstra et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemistry & Molecular Biology

NMR-detected conformational exchange observed in a computationally designed variant of protein Gβ1

Karin A. Crowhurst et al.

PROTEIN ENGINEERING DESIGN & SELECTION (2008)

Article Multidisciplinary Sciences

De novo computational design of retro-aldol enzymes

Lin Jiang et al.

SCIENCE (2008)

Article Biochemistry & Molecular Biology

Pressure-induced changes in the solution structure of the GB1 domain of protein G

David J. Wilton et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

The point mutation A34F causes dimerization of GB1

JunGoo Jee et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)

Review Multidisciplinary Sciences

Dynamic personalities of proteins

Katherine Henzler-Wildman et al.

NATURE (2007)

Article Chemistry, Multidisciplinary

Dramatic performance enhancements for the FASTER optimization algorithm

Benjamin D. Allen et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2006)

Article Chemistry, Multidisciplinary

Computational design of a single amino acid sequence that can switch between two distinct protein folds

XI Ambroggio et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2006)

Article Biochemistry & Molecular Biology

The backrub motion: How protein backbone shrugs when a sidechain dances

IW Davis et al.

STRUCTURE (2006)

Article Multidisciplinary Sciences

Identification of slow correlated motions in proteins using residual dipolar and hydrogen-bond scalar couplings

G Bouvignies et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

Scoring function for automated assessment of protein structure template quality

Y Zhang et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)

Article Multidisciplinary Sciences

Design of a novel globular protein fold with atomic-level accuracy

B Kuhlman et al.

SCIENCE (2003)

Article Mathematics, Applied

A survey of truncated-Newton methods

SG Nash

JOURNAL OF COMPUTATIONAL AND APPLIED MATHEMATICS (2000)