4.8 Article

A new genome-mining tool redefines the lasso peptide biosynthetic landscape

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters

Kai Blin et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Biochemistry & Molecular Biology

Construction of Lasso Peptide Fusion Proteins

Chuhan Zong et al.

ACS CHEMICAL BIOLOGY (2016)

Review Chemistry, Medicinal

Using Genomics for Natural Product Structure Elucidation

Jonathan I. Tietz et al.

CURRENT TOPICS IN MEDICINAL CHEMISTRY (2016)

Review Plant Sciences

Natural Products as Sources of New Drugs from 1981 to 2014

David J. Newman et al.

JOURNAL OF NATURAL PRODUCTS (2016)

Article Biochemistry & Molecular Biology

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Article Biochemistry & Molecular Biology

The ring residue proline 8 is crucial for the thermal stability of the lasso peptide caulosegnin II

Julian D. Hegemann et al.

MOLECULAR BIOSYSTEMS (2016)

Article Multidisciplinary Sciences

Genomic charting of ribosomally synthesized natural product chemical space facilitates targeted mining

Michael A. Skinnider et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Review Chemistry, Multidisciplinary

Lasso Peptides: An Intriguing Class of Bacterial Natural Products

Julian D. Hegemann et al.

ACCOUNTS OF CHEMICAL RESEARCH (2015)

Review Biochemistry & Molecular Biology

Enzyme Function Initiative-Enzyme Similarity Tool (EFI-EST): A web tool for generating protein sequence similarity networks

John A. Gerlt et al.

BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2015)

Article Biochemistry & Molecular Biology

Structural analysis of leader peptide binding enables leader-free cyanobactin processing

Jesko Koehnke et al.

NATURE CHEMICAL BIOLOGY (2015)

Editorial Material Biochemistry & Molecular Biology

Minimum Information about a Biosynthetic Gene cluster

Marnix H. Medema et al.

NATURE CHEMICAL BIOLOGY (2015)

Article Biochemistry & Molecular Biology

A prevalent peptide-binding domain guides ribosomal natural product biosynthesis

Brandon J. Burkhart et al.

NATURE CHEMICAL BIOLOGY (2015)

Review Genetics & Heredity

Machine learning applications in genetics and genomics

Maxwell W. Libbrecht et al.

NATURE REVIEWS GENETICS (2015)

Article Biochemistry & Molecular Biology

antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters

Tilmann Weber et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

The MEME Suite

Timothy L. Bailey et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

HMMER web server: 2015 update

Robert D. Finn et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Multidisciplinary Sciences

The peptidylarginine deiminase gene is a conserved feature of Porphyromonas gingivalis

Giorgio Gabarrini et al.

SCIENTIFIC REPORTS (2015)

Article Biochemistry & Molecular Biology

UniProt: a hub for protein information

Alex Bateman et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

A roadmap for natural product discovery based on large-scale genomics and metabolomics

James R. Doroghazi et al.

NATURE CHEMICAL BIOLOGY (2014)

Article Biochemistry & Molecular Biology

IMG 4 version of the integrated microbial genomes comparative analysis system

Victor M. Markowitz et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

Pfam: the protein families database

Robert D. Finn et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Chemistry, Multidisciplinary

Discovery and Characterization of an Isopeptidase That Linearizes Lasso Peptides

Mikhail O. Maksimov et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2013)

Article Biochemistry & Molecular Biology

BAGEL3: automated identification of genes encoding bacteriocins and (non-)bactericidal posttranslationally modified peptides

Auke J. van Heel et al.

NUCLEIC ACIDS RESEARCH (2013)

Review Biochemistry & Molecular Biology

NMR as an Effective Tool for the Structure Determination of Lasso Peptides

Xiulan Xie et al.

CHEMBIOCHEM (2012)

Article Chemistry, Multidisciplinary

The role of a conserved threonine residue in the leader peptide of lasso peptide precursors

Si Jia Pan et al.

CHEMICAL COMMUNICATIONS (2012)

Review Biochemistry & Molecular Biology

Lasso peptides: structure, function, biosynthesis, and engineering

Mikhail O. Maksimov et al.

NATURAL PRODUCT REPORTS (2012)

Article Multidisciplinary Sciences

Precursor-centric genome-mining approach for lasso peptide discovery

Mikhail O. Maksimov et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Review Biochemistry & Molecular Biology

Genomics-inspired discovery of natural products

Jaclyn M. Winter et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2011)

Article Biochemistry & Molecular Biology

NRPSpredictor2-a web server for predicting NRPS adenylation domain specificity

Marc Roettig et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemistry & Molecular Biology

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

Ivica Letunic et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemistry & Molecular Biology

Learning generative models for protein fold families

Sivaraman Balakrishnan et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

Circos: An information aesthetic for comparative genomics

Martin Krzywinski et al.

GENOME RESEARCH (2009)

Article Biochemistry & Molecular Biology

Fast and accurate automatic structure prediction with HHpred

Andrea Hildebrand et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)

Article Biochemical Research Methods

PSAT: A web tool to compare genomic neighborhoods of multiple prokaryotic genomes

Christine Fong et al.

BMC BIOINFORMATICS (2008)

Review Chemistry, Physical

Using Xplor-NIH for NMR molecular structure determination

CD Schwieters et al.

PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY (2006)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

WebLogo: A sequence logo generator

GE Crooks et al.

GENOME RESEARCH (2004)