4.8 Article

Plasmodium malariae and P. ovale genomes provide insights into malaria parasite evolution

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

Structurally conserved erythrocyte-binding domain in Plasmodium provides a versatile scaffold for alternate receptor engagement

Jakub Gruszczyk et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Biochemistry & Molecular Biology

Companion: a web server for annotation and analysis of parasite genomes

Sascha Steinbiss et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Multidisciplinary Sciences

Genomes of cryptic chimpanzee Plasmodium species reveal key evolutionary events leading to human malaria

Sesh A. Sundararaman et al.

NATURE COMMUNICATIONS (2016)

Article Biochemistry & Molecular Biology

A New Method for Estimating Species Age Supports the Coexistence of Malaria Parasites and Their Mammalian Hosts

Joana C. Silva et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Letter Biochemical Research Methods

The I-TASSER Suite: protein structure and function prediction

Jianyi Yang et al.

NATURE METHODS (2015)

Article Multidisciplinary Sciences

Modeling malaria genomics reveals transmission decline and rebound in Senegal

Rachel F. Daniels et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Biochemistry & Molecular Biology

Rfam 12.0: updates to the RNA families database

Eric P. Nawrocki et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Genetics & Heredity

Optimized Whole-Genome Amplification Strategy for Extremely AT-Biased Template

Samuel O. Oyola et al.

DNA RESEARCH (2014)

Article Genetics & Heredity

The common marmoset genome provides insight into primate biology and evolution

Kim C. Worley et al.

NATURE GENETICS (2014)

Review Microbiology

Asymptomatic malaria infections: detectability, transmissibility and public health relevance

Teun Bousema et al.

NATURE REVIEWS MICROBIOLOGY (2014)

Article Multidisciplinary Sciences

Genome sequencing of chimpanzee malaria parasites reveals possible pathways of adaptation to human hosts

Thomas D. Otto et al.

NATURE COMMUNICATIONS (2014)

Article Biochemical Research Methods

The MaSuRCA genome assembler

Aleksey V. Zimin et al.

BIOINFORMATICS (2013)

Article Biochemical Research Methods

Streaming fragment assignment for real-time analysis of sequencing experiments

Adam Roberts et al.

NATURE METHODS (2013)

Article Biochemical Research Methods

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

Chen-Shan Chin et al.

NATURE METHODS (2013)

Article Multidisciplinary Sciences

High diversity of West African bat malaria parasites and a tight link with rodent Plasmodium taxa

Juliane Schaer et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Biochemistry & Molecular Biology

The Plasmodium Apicoplast Genome: Conserved Structure and Close Relationship of P. ovale to Rodent Malaria Parasites

Nobuko Arisue et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Biochemical Research Methods

Scaffolding pre-assembled contigs using SSPACE

Marten Boetzer et al.

BIOINFORMATICS (2011)

Article Biotechnology & Applied Microbiology

Directional gene expression and antisense transcripts in sexual and asexual stages of Plasmodium falciparum

Maria J. Lopez-Barragan et al.

BMC GENOMICS (2011)

Article Genetics & Heredity

Bayesian inference of ancient human demography from individual genome sequences

Ilan Gronau et al.

NATURE GENETICS (2011)

Article Biochemistry & Molecular Biology

RATT: Rapid Annotation Transfer Tool

Thomas D. Otto et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemical Research Methods

Studying the co-evolution of protein families with the Mirrortree web server

David Ochoa et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology

Thomas D. Otto et al.

BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

Aaron McKenna et al.

GENOME RESEARCH (2010)

Article Immunology

Two Nonrecombining Sympatric Forms of the Human Malaria Parasite Plasmodium ovale Occur Globally

Colin J. Sutherland et al.

JOURNAL OF INFECTIOUS DISEASES (2010)

Article Biotechnology & Applied Microbiology

Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps

Isheng J. Tsai et al.

GENOME BIOLOGY (2010)

Article Biochemical Research Methods

ABACAS: algorithm-based automatic contiguation of assembled sequences

Samuel Assefa et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

Nicolas Lartillot et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Fast Statistical Alignment

Robert K. Bradley et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Microbiology

A New Malaria Agent in African Hominids

Benjamin Ollomo et al.

PLOS PATHOGENS (2009)

Article Biochemical Research Methods

I-TASSER server for protein 3D structure prediction

Yang Zhang

BMC BIOINFORMATICS (2008)

Article Multidisciplinary Sciences

The genome of the simian and human malaria parasite Plasmodium knowlesi

A. Pain et al.

NATURE (2008)

Article Multidisciplinary Sciences

Comparative genomics of the neglected human malaria parasite Plasmodium vivax

Jane M. Carlton et al.

NATURE (2008)

Article Evolutionary Biology

A Rapid Bootstrap Algorithm for the RAxML Web Servers

Alexandros Stamatakis et al.

SYSTEMATIC BIOLOGY (2008)

Article Genetics & Heredity

Adaptive gene expression divergence inferred from population genomics

Alisha K. Holloway et al.

PLOS GENETICS (2007)

Review Microbiology

Plasmodium malariae:: Parasite and Disease

William E. Collins et al.

CLINICAL MICROBIOLOGY REVIEWS (2007)

Article Biochemistry & Molecular Biology

Template-based modeling and free modeling by I-TASSER in CASP7

Yang Zhang

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

AUGUSTUS:: ab initio prediction of alternative transcripts

Mario Stanke et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemical Research Methods

A fast and symmetric DUST implementation to mask low-complexity DNA sequences

Aleksandr Morgulis et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2006)

Article Biochemical Research Methods

ACT: the Artemis comparison tool

TJ Carver et al.

BIOINFORMATICS (2005)

Review Microbiology

Plasmodium ovale:: Parasite and disease

WE Collins et al.

CLINICAL MICROBIOLOGY REVIEWS (2005)

Article Biochemical Research Methods

RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees

A Stamatakis et al.

BIOINFORMATICS (2005)

Review Multidisciplinary Sciences

Initial sequence of the chimpanzee genome and comparison with the human genome

TS Mikkelsen et al.

NATURE (2005)

Article Biochemistry & Molecular Biology

TM-align: a protein structure alignment algorithm based on the TM-score

Y Zhang et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

OrthoMCL: Identification of ortholog groups for eukaryotic genomes

L Li et al.

GENOME RESEARCH (2003)

Review Multidisciplinary Sciences

Genome sequence of the human malaria parasite Plasmodium falciparum

MJ Gardner et al.

NATURE (2002)

Article Biochemistry & Molecular Biology

An efficient algorithm for large-scale detection of protein families

AJ Enright et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Biochemical Research Methods

Artemis: sequence visualization and annotation

K Rutherford et al.

BIOINFORMATICS (2000)