相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Structurally conserved erythrocyte-binding domain in Plasmodium provides a versatile scaffold for alternate receptor engagement
Jakub Gruszczyk et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Genome-scale comparison of expanded gene families in Plasmodium ovale wallikeri and Plasmodium ovale curtisi with Plasmodium malariae and with other Plasmodium species
Hifzur Rahman Ansari et al.
INTERNATIONAL JOURNAL FOR PARASITOLOGY (2016)
Companion: a web server for annotation and analysis of parasite genomes
Sascha Steinbiss et al.
NUCLEIC ACIDS RESEARCH (2016)
Genomes of cryptic chimpanzee Plasmodium species reveal key evolutionary events leading to human malaria
Sesh A. Sundararaman et al.
NATURE COMMUNICATIONS (2016)
Variant Exported Blood-Stage Proteins Encoded by Plasmodium Multigene Families Are Expressed in Liver Stages Where They Are Exported into the Parasitophorous Vacuole
Aurelie Fougere et al.
PLOS PATHOGENS (2016)
A New Method for Estimating Species Age Supports the Coexistence of Malaria Parasites and Their Mammalian Hosts
Joana C. Silva et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
The I-TASSER Suite: protein structure and function prediction
Jianyi Yang et al.
NATURE METHODS (2015)
Modeling malaria genomics reveals transmission decline and rebound in Senegal
Rachel F. Daniels et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Natural infection of Plasmodium brasilianum in humans: Man and monkey share quartan malaria parasites in the Venezuelan Amazon
Albert Lalremruata et al.
EBIOMEDICINE (2015)
Rfam 12.0: updates to the RNA families database
Eric P. Nawrocki et al.
NUCLEIC ACIDS RESEARCH (2015)
A comprehensive evaluation of rodent malaria parasite genomes and gene expression
Thomas D. Otto et al.
BMC BIOLOGY (2014)
Optimized Whole-Genome Amplification Strategy for Extremely AT-Biased Template
Samuel O. Oyola et al.
DNA RESEARCH (2014)
The ears of the African elephant: unexpected high seroprevalence of Plasmodium ovale and Plasmodium malariae in healthy populations in Western Africa
Cecile Doderer-Lang et al.
MALARIA JOURNAL (2014)
The common marmoset genome provides insight into primate biology and evolution
Kim C. Worley et al.
NATURE GENETICS (2014)
Asymptomatic malaria infections: detectability, transmissibility and public health relevance
Teun Bousema et al.
NATURE REVIEWS MICROBIOLOGY (2014)
Genome sequencing of chimpanzee malaria parasites reveals possible pathways of adaptation to human hosts
Thomas D. Otto et al.
NATURE COMMUNICATIONS (2014)
Generation of Antigenic Diversity in Plasmodium falciparum by Structured Rearrangement of Var Genes During Mitosis
Antoine Claessens et al.
PLOS GENETICS (2014)
The MaSuRCA genome assembler
Aleksey V. Zimin et al.
BIOINFORMATICS (2013)
Streaming fragment assignment for real-time analysis of sequencing experiments
Adam Roberts et al.
NATURE METHODS (2013)
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
Chen-Shan Chin et al.
NATURE METHODS (2013)
High diversity of West African bat malaria parasites and a tight link with rodent Plasmodium taxa
Juliane Schaer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
An observational study of malaria in British travellers: Plasmodium ovale wallikeri and Plasmodium ovale curtisi differ significantly in the duration of latency
Debbie Nolder et al.
BMJ OPEN (2013)
The Plasmodium Apicoplast Genome: Conserved Structure and Close Relationship of P. ovale to Rodent Malaria Parasites
Nobuko Arisue et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade
Shin-Ichiro Tachibana et al.
NATURE GENETICS (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Scaffolding pre-assembled contigs using SSPACE
Marten Boetzer et al.
BIOINFORMATICS (2011)
Directional gene expression and antisense transcripts in sexual and asexual stages of Plasmodium falciparum
Maria J. Lopez-Barragan et al.
BMC GENOMICS (2011)
Bayesian inference of ancient human demography from individual genome sequences
Ilan Gronau et al.
NATURE GENETICS (2011)
RATT: Rapid Annotation Transfer Tool
Thomas D. Otto et al.
NUCLEIC ACIDS RESEARCH (2011)
An Effective Method to Purify Plasmodium falciparum DNA Directly from Clinical Blood Samples for Whole Genome High-Throughput Sequencing
Sarah Auburn et al.
PLOS ONE (2011)
Studying the co-evolution of protein families with the Mirrortree web server
David Ochoa et al.
BIOINFORMATICS (2010)
Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology
Thomas D. Otto et al.
BIOINFORMATICS (2010)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
Two Nonrecombining Sympatric Forms of the Human Malaria Parasite Plasmodium ovale Occur Globally
Colin J. Sutherland et al.
JOURNAL OF INFECTIOUS DISEASES (2010)
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Stephane Guindon et al.
SYSTEMATIC BIOLOGY (2010)
Identification and Genome-Wide Prediction of DNA Binding Specificities for the ApiAP2 Family of Regulators from the Malaria Parasite
Tracey L. Campbell et al.
PLOS PATHOGENS (2010)
Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps
Isheng J. Tsai et al.
GENOME BIOLOGY (2010)
ABACAS: algorithm-based automatic contiguation of assembled sequences
Samuel Assefa et al.
BIOINFORMATICS (2009)
PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
Nicolas Lartillot et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast Statistical Alignment
Robert K. Bradley et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
A New Malaria Agent in African Hominids
Benjamin Ollomo et al.
PLOS PATHOGENS (2009)
I-TASSER server for protein 3D structure prediction
Yang Zhang
BMC BIOINFORMATICS (2008)
The genome of the simian and human malaria parasite Plasmodium knowlesi
A. Pain et al.
NATURE (2008)
Comparative genomics of the neglected human malaria parasite Plasmodium vivax
Jane M. Carlton et al.
NATURE (2008)
A Rapid Bootstrap Algorithm for the RAxML Web Servers
Alexandros Stamatakis et al.
SYSTEMATIC BIOLOGY (2008)
Adaptive gene expression divergence inferred from population genomics
Alisha K. Holloway et al.
PLOS GENETICS (2007)
Plasmodium malariae:: Parasite and Disease
William E. Collins et al.
CLINICAL MICROBIOLOGY REVIEWS (2007)
Template-based modeling and free modeling by I-TASSER in CASP7
Yang Zhang
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
Gerard Talavera et al.
SYSTEMATIC BIOLOGY (2007)
AUGUSTUS:: ab initio prediction of alternative transcripts
Mario Stanke et al.
NUCLEIC ACIDS RESEARCH (2006)
Modified Hudson-Kreitman-Aguade test and two-dimensional evaluation of neutrality tests
Hideki Innan
GENETICS (2006)
A fast and symmetric DUST implementation to mask low-complexity DNA sequences
Aleksandr Morgulis et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2006)
ACT: the Artemis comparison tool
TJ Carver et al.
BIOINFORMATICS (2005)
Plasmodium ovale:: Parasite and disease
WE Collins et al.
CLINICAL MICROBIOLOGY REVIEWS (2005)
RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees
A Stamatakis et al.
BIOINFORMATICS (2005)
Initial sequence of the chimpanzee genome and comparison with the human genome
TS Mikkelsen et al.
NATURE (2005)
TM-align: a protein structure alignment algorithm based on the TM-score
Y Zhang et al.
NUCLEIC ACIDS RESEARCH (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
L Li et al.
GENOME RESEARCH (2003)
Genome sequence of the human malaria parasite Plasmodium falciparum
MJ Gardner et al.
NATURE (2002)
An efficient algorithm for large-scale detection of protein families
AJ Enright et al.
NUCLEIC ACIDS RESEARCH (2002)
The K-A/K-S ratio test for assessing the protein-coding potential of genomic regions: An empirical and simulation study
A Nekrutenko et al.
GENOME RESEARCH (2002)
Artemis: sequence visualization and annotation
K Rutherford et al.
BIOINFORMATICS (2000)