期刊
SOURCE CODE FOR BIOLOGY AND MEDICINE
卷 14, 期 -, 页码 -出版社
BMC
DOI: 10.1186/s13029-019-0071-7
关键词
Transcriptomics analysis; Microarray; Gene expression; R shiny
资金
- Academy of Finland [275151, 292307]
- EU H2020 LIFEPATH [633666]
- Academy of Finland (AKA) [275151, 292307, 275151, 292307] Funding Source: Academy of Finland (AKA)
BackgroundApplication of microarrays in omics technologies enables quantification of many biomolecules simultaneously. It is widely applied to observe the positive or negative effect on biomolecule activity in perturbed versus the steady state by quantitative comparison. Community resources, such as Bioconductor and CRAN, host tools based on R language that have become standard for high-throughput analytics. However, application of these tools is technically challenging for generic users and require specific computational skills. There is a need for intuitive and easy-to-use platform to process omics data, visualize, and interpret results.ResultsWe propose an integrated software solution, eUTOPIA, that implements a set of essential processing steps as a guided workflow presented to the user as an R Shiny application.ConclusionseUTOPIA allows researchers to perform preprocessing and analysis of microarray data via a simple and intuitive graphical interface while using state of the art methods.
作者
我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。
推荐
暂无数据