4.7 Article

New barcoded primers for efficient retrieval of cercozoan sequences in high-throughput environmental diversity surveys, with emphasis on worldwide biological soil crusts

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Evolutionary Origins of Rhizarian Parasites

Roberto Sierra et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Article Ecology

Local diversity of heathland Cercozoa explored by in-depth sequencing

Christoffer Bugge Harder et al.

ISME JOURNAL (2016)

Article Microbiology

High Diversity Revealed in Leaf-Associated Protists (Rhizaria: Cercozoa) of Brassicaceae

Sebastian Ploch et al.

JOURNAL OF EUKARYOTIC MICROBIOLOGY (2016)

Article Biochemistry & Molecular Biology

Reducing long-branch effects in multi-protein data uncovers a close relationship between Alveolata and Rhizaria

Ding He et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2016)

Article Biochemistry & Molecular Biology

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

Ivica Letunic et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Parasitology

Richness and distribution of tropical oyster parasites in two oceans

Katrina M. Pagenkopp Lohan et al.

PARASITOLOGY (2016)

Article Multidisciplinary Sciences

VSEARCH: a versatile open source tool for metagenomics

Torbjorn Rognes et al.

Article Multidisciplinary Sciences

Metacommunity analysis of amoeboid protists in grassland soils

Anna Maria Fiore-Donno et al.

SCIENTIFIC REPORTS (2016)

Article Ecology

Metatranscriptomic census of active protists in soils

Stefan Geisen et al.

ISME JOURNAL (2015)

Article Microbiology

Estimating Protistan Diversity Using High-Throughput Sequencing

Sarah K. Hu et al.

JOURNAL OF EUKARYOTIC MICROBIOLOGY (2015)

Article Biochemistry & Molecular Biology

Accurate multiplexing and filtering for high-throughput amplicon-sequencing

Philippe Esling et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Multidisciplinary Sciences

Eukaryotic plankton diversity in the sunlit ocean

Colomban de Vargas et al.

SCIENCE (2015)

Article Biochemical Research Methods

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis

BIOINFORMATICS (2014)

Editorial Material Biochemistry & Molecular Biology

Rhizaria

Fabien Burki et al.

CURRENT BIOLOGY (2014)

Article Biotechnology & Applied Microbiology

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

James J. Kozich et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)

Article Biodiversity Conservation

Changes in biocrust cover drive carbon cycle responses to climate change in drylands

Fernando T. Maestre et al.

GLOBAL CHANGE BIOLOGY (2013)

Article Ecology

Global biogeography of highly diverse protistan communities in soil

Scott T. Bates et al.

ISME JOURNAL (2013)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

Impacts of inundation and drought on eukaryote biodiversity in semi-arid floodplain soils

Darren S. Baldwin et al.

MOLECULAR ECOLOGY (2013)

Article Geosciences, Multidisciplinary

Contribution of cryptogamic covers to the global cycles of carbon and nitrogen

Wolfgang Elbert et al.

NATURE GEOSCIENCE (2012)

Article Biochemistry & Molecular Biology

CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms

Jan Pawlowski et al.

PLOS BIOLOGY (2012)

Article Biotechnology & Applied Microbiology

Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification

David Berry et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)

Article Biochemical Research Methods

UCHIME improves sensitivity and speed of chimera detection

Robert C. Edgar et al.

BIOINFORMATICS (2011)

Article Plant Sciences

Reduction of heteroduplex formation in PCR amplification

E. Michu et al.

BIOLOGIA PLANTARUM (2010)

Article Biochemistry & Molecular Biology

Evolutionary relationships among marine cercozoans as inferred from combined SSU and LSU rDNA sequences and polyubiquitin insertions

Chitchai Chantangsi et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2010)

Article Biotechnology & Applied Microbiology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

Patrick D. Schloss et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Article Biochemical Research Methods

BLAST plus : architecture and applications

Christiam Camacho et al.

BMC BIOINFORMATICS (2009)

Article Microbiology

Environmental rRNA inventories miss over half of protistan diversity

Sunok Jeon et al.

BMC MICROBIOLOGY (2008)

Article Microbiology

Elevated atmospheric CO2 affects soil microbial diversity associated with trembling aspen

Celine Lesaulnier et al.

ENVIRONMENTAL MICROBIOLOGY (2008)

Article Ecology

Testate amoebae and nutrient cycling: peering into the black box of soil ecology

David M. Wilkinson

TRENDS IN ECOLOGY & EVOLUTION (2008)

Article Biology

A multiple-site similarity measure independent of richness

Andres Baselga et al.

BIOLOGY LETTERS (2007)

Article Microbiology

Ebriid phylogeny and the expansion of the Cercozoa

Mona Hoppenrath et al.

PROTIST (2006)

Article Microbiology

Phylum-specific environmental DNA analysis reveals remarkably high global biodiversity of Cercozoa (Protozoa)

D Bass et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2004)

Article Microbiology

Phylogeny and classification of phylum Cercozoa (Protozoa)

T Cavalier-Smith et al.

PROTIST (2003)

Article Biochemistry & Molecular Biology

Distribution of rRNA introns in the three-dimensional structure of the ribosome

SA Jackson et al.

JOURNAL OF MOLECULAR BIOLOGY (2002)