期刊
JOURNAL OF STRUCTURAL BIOLOGY
卷 200, 期 2, 页码 106-117出版社
ACADEMIC PRESS INC ELSEVIER SCIENCE
DOI: 10.1016/j.jsb.2017.09.007
关键词
Angular reconstitution; Ciyo-electron microscopy; Single particle reconstruction; Synchronization; Ab initio reconstruction; Common lines
资金
- European Research Council (ERC) under the European Union's Horizon research and innovation programme [723991]
- Israel Science Foundation [578/14]
- NIGMS [R01GM090200]
- European Research Council (ERC) [723991] Funding Source: European Research Council (ERC)
We consider the problem of estimating an unbiased and reference-free ab initio model for non-symmetric molecules from images generated by single-particle cryo-electron microscopy. The proposed algorithm finds the globally optimal assignment of orientations that simultaneously respects all common lines between all images. The contribution of each common line to the estimated orientations is weighted according to a statistical model for common lines' detection errors. The key property of the proposed algorithm is that it finds the global optimum for the orientations given the common lines. In particular, any local optima in the common lines energy landscape do not affect the proposed algorithm. As a result, it is applicable to thousands of images at once, very robust to noise, completely reference free, and not biased towards any initial model. A byproduct of the algorithm is a set of measures that allow to asses the reliability of the obtained ab initio model. We demonstrate the algorithm using class averages from two experimental data sets, resulting in ab initio models with resolutions of 20 angstrom or better, even from class averages consisting of as few as three raw images per class.
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