Measurements and APSIM modelling of soil C and N dynamics

Process-based models capture our understanding of key processes that interact to determine productivity and environmental outcomes. Combining measurements and modelling together help assess the consequences of these interactions, identify knowledge gaps and improve understanding of these processes. Here, we present a dataset (collected in a two-month fallow period) and list potential issues related to use of the APSIM model in predicting fluxes of soil water, heat, nitrogen (N) and carbon (C). Within the APSIM framework, two soil water modules (SoilWat and SWIM3) were used to predict soil evaporation and soil moisture content. SWIM3 tended to overestimate soil evaporation immediately after rainfall events, and SoilWat provided better predictions of evaporation. Our results highlight the need for testing the modules using data that includes wetting and drying cycles. Two soil temperature modules were also evaluated. Predictions of soil temperature were better for SoilTemp than the default module. APSIM configured with different combinations of soil water and temperature modules predicted nitrate dynamics well, but poorly predicted ammonium-N dynamics. The predicted ammonium-N pool empties several weeks after fertilisation, which was not observed, indicating that the processes of mineralisation and nitrification in APSIM require improvements. The fluxes of soil respiration and nitrous oxide, measured by chamber and micrometeorological methods, were roughly captured by APSIM. Discrepancies between the fluxes measured with chamber and micrometeorological techniques highlight difficulties in obtaining accurate measurements for evaluating performance of APSIM to predict gaseous fluxes. There was uncertainty associated with soil depth, which contributed to surface emissions. Our results showed that APSIM performance in simulating N2O fluxes should be considered in relation to data precision and uncertainty, especially the soil depths included in simulations. Finally, there was a major disconnection between the predicted N loss from denitrification (N-2 + N2O) and that measured using the N-15 balance technique.