4.5 Article

D3GB: An Interactive Genome Browser for R, Python, and WordPress

期刊

JOURNAL OF COMPUTATIONAL BIOLOGY
卷 24, 期 5, 页码 447-449

出版社

MARY ANN LIEBERT, INC
DOI: 10.1089/cmb.2016.0213

关键词

genome browser; next generation sequencing; Python; R; visualization; WordPress

资金

  1. Operational Programme of Youth Employment, European Social Fund (ESF), Junta de Castilla y Leon (JCyL)
  2. Spanish Ministry of Economy, Industry and Competitiveness (MINECO) [PTA2015-10483-I]

向作者/读者索取更多资源

Genome browsers are useful not only for showing final results but also for improving analysis protocols, testing data quality, and generating result drafts. Its integration in analysis pipelines allows the optimization of parameters, which leads to better results. New developments that facilitate the creation and utilization of genome browsers could contribute to improving analysis results and supporting the quick visualization of genomic data. D3 Genome Browser is an interactive genome browser that can be easily integrated in analysis protocols and shared on the Web. It is distributed as an R package, a Python module, and a WordPress plugin to facilitate its integration in pipelines and the utilization of platform capabilities. It is compatible with popular data formats such as GenBank, GFF, BED, FASTA, and VCF, and enables the exploration of genomic data with a Web browser.

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