相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。LNCediting: a database for functional effects of RNA editing in lncRNAs
Jing Gong et al.
NUCLEIC ACIDS RESEARCH (2017)
Differentiation of mammary tumors and reduction in metastasis upon Malat1 lncRNA loss
Gayatri Arun et al.
GENES & DEVELOPMENT (2016)
Cellular localization of long non-coding RNAs affects silencing by RNAi more than by antisense oligonucleotides
Kim A. Lennox et al.
NUCLEIC ACIDS RESEARCH (2016)
Lessons from reverse-genetic studies of lncRNAs
Shinichi Nakagawa
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2016)
Programmable RNA Tracking in Live Cells with CRISPR/Cas9
David A. Nelles et al.
CELL (2016)
TRIBE: Hijacking an RNA-Editing Enzyme to Identify Cell-Specific Targets of RNA-Binding Proteins
Aoife C. McMahon et al.
CELL (2016)
Decoding the RNA structurome
Zhipeng Lu et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2016)
Global Mapping of Human RNA-RNA Interactions
Eesha Sharma et al.
MOLECULAR CELL (2016)
The long non-coding RNA Morrbid regulates Bim and short-lived myeloid cell lifespan
Jonathan J. Kotzin et al.
NATURE (2016)
Genome-scale deletion screening of human long non-coding RNAs using a paired-guide RNA CRISPR-Cas9 library
Shiyou Zhu et al.
NATURE BIOTECHNOLOGY (2016)
Transcriptome-wide mapping reveals reversible and dynamic N1-methyladenosine methylome
Xiaoyu Li et al.
NATURE CHEMICAL BIOLOGY (2016)
p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity
Carmen Adriaens et al.
NATURE MEDICINE (2016)
irCLIP platform for efficient characterization of protein-RNA interactions
Brian J. Zarnegar et al.
NATURE METHODS (2016)
Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP)
Eric L. Van Nostrand et al.
NATURE METHODS (2016)
Enhancers as non-coding RNA transcription units: recent insights and future perspectives
Wenbo Li et al.
NATURE REVIEWS GENETICS (2016)
Unique features of long non-coding RNA biogenesis and function
Jeffrey J. Quinn et al.
NATURE REVIEWS GENETICS (2016)
Circular non-coding RNA ANRIL modulates ribosomal RNA maturation and atherosclerosis in humans
Lesca M. Holdt et al.
NATURE COMMUNICATIONS (2016)
The long noncoding RNA CASC2 functions as a competing endogenous RNA by sponging miR-18a in colorectal cancer
Guanli Huang et al.
SCIENTIFIC REPORTS (2016)
LncRNA-UCA1 enhances cell proliferation and 5-fluorouracil resistance in colorectal cancer by inhibiting miR-204-5p
Zehua Bian et al.
SCIENTIFIC REPORTS (2016)
Structure and Mechanism of RNA Mimics of Green Fluorescent Protein
Mingxu You et al.
ANNUAL REVIEW OF BIOPHYSICS, VOL 44 (2015)
LncRNAs in vertebrates: Advances and challenges
Allison C. Mallory et al.
BIOCHIMIE (2015)
Applications of Cas9 as an RNA-programmed RNA-binding protein
David A. Nelles et al.
BIOESSAYS (2015)
DECKO: Single-oligo, dual-CRISPR deletion of genomic elements including long non-coding RNAs
Estel Aparicio-Prat et al.
BMC GENOMICS (2015)
Systematic Discovery of Xist RNA Binding Proteins
Ci Chu et al.
CELL (2015)
RNA Exosome-Regulated Long Non-Coding RNA Transcription Controls Super-Enhancer Activity
Evangelos Pefanis et al.
CELL (2015)
The long non-coding RNA HOTTIP promotes progression and gemcitabine resistance by regulating HOXA13 in pancreatic cancer
Zhihua Li et al.
JOURNAL OF TRANSLATIONAL MEDICINE (2015)
HOTAIR Forms an Intricate and Modular Secondary Structure
Srinivas Somarowthu et al.
MOLECULAR CELL (2015)
The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3
Colleen A. McHugh et al.
NATURE (2015)
Rap and chirp about X inactivation
Anna Roth et al.
NATURE (2015)
The emerging role of IncRNAs in cancer
Maite Huarte
NATURE MEDICINE (2015)
Protein-RNA networks revealed through covalent RNA marks
Christopher P. Lapointe et al.
NATURE METHODS (2015)
Fluorescent in situ sequencing (FISSEQ) of RNA for gene expression profiling in intact cells and tissues
Je Hyuk Lee et al.
NATURE PROTOCOLS (2015)
Technologies to probe functions and mechanisms of long noncoding RNAs
Ci Chu et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)
Junk DNA and the long non-coding RNA twist in cancer genetics
H. Ling et al.
ONCOGENE (2015)
PRUNE2 is a human prostate cancer suppressor regulated by the intronic long noncoding RNA PCA3
Ahmad Salameh et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Control of Chromatin Structure by Long Noncoding RNA
Gudrun Boehmdorfer et al.
TRENDS IN CELL BIOLOGY (2015)
Technologies to probe functions and mechanisms of long noncoding RNAs
Ci Chu et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)
lncRNA GAS5 enhances G1 cell cycle arrest via binding to YBX1 to regulate p21 expression in stomach cancer
Yongchao Liu et al.
SCIENTIFIC REPORTS (2015)
Localization and abundance analysis of human IncRNAs at single-cell and single-molecule resolution
Moran N. Cabili et al.
GENOME BIOLOGY (2015)
Targeting non-coding RNAs with the CRISPR/Cas9 system in human cell lines
Tsui-Ting Ho et al.
NUCLEIC ACIDS RESEARCH (2015)
Long Noncoding RNAs in Cancer: From Function to Translation
Anirban Sahu et al.
TRENDS IN CANCER (2015)
IncRNA Directs Cooperative Epigenetic Regulation Downstream of Chemokine Signals
Zhen Xing et al.
CELL (2014)
H3K4me3 Breadth Is Linked to Cell Identity and Transcriptional Consistency
Berenice A. Benayoun et al.
CELL (2014)
Long Noncoding RNAs in Cell-Fate Programming and Reprogramming
Ryan A. Flynn et al.
CELL STEM CELL (2014)
Long Noncoding RNAs: Emerging Stars in Gene Regulation, Epigenetics and Human Disease
Arunoday Bhan et al.
CHEMMEDCHEM (2014)
Long Noncoding RNAs as Putative Biomarkers for Prostate Cancer Detection
Bongyong Lee et al.
JOURNAL OF MOLECULAR DIAGNOSTICS (2014)
GAS5 long non-coding RNA in malignant pleural mesothelioma
Arun Renganathan et al.
MOLECULAR CANCER (2014)
The Long Noncoding RNAs NEAT1 and MALAT1 Bind Active Chromatin Sites
Jason A. West et al.
MOLECULAR CELL (2014)
Dynamic RNA Modifications in Posttranscriptional Regulation
Xiao Wang et al.
MOLECULAR CELL (2014)
Unambiguous Identification of miRNA: Target Site Interactions by Different Types of Ligation Reactions
Stefanie Grosswendt et al.
MOLECULAR CELL (2014)
Programmable RNA recognition and cleavage by CRISPR/Cas9
Mitchell R. O'Connell et al.
NATURE (2014)
CRISPR-Cas systems for editing, regulating and targeting genomes
Jeffry D. Sander et al.
NATURE BIOTECHNOLOGY (2014)
Revealing long noncoding RNA architecture and functions using domain-specific chromatin isolation by RNA purification
Jeffrey J. Quinn et al.
NATURE BIOTECHNOLOGY (2014)
Long non-coding RNAs: new players in cell differentiation and development
Alessandro Fatica et al.
NATURE REVIEWS GENETICS (2014)
NON-CODING RNA Zooming in on lncRNA functions
Esther Lau
NATURE REVIEWS GENETICS (2014)
BRIC-seq: A genome-wide approach for determining RNA stability in mammalian cells
Naoto Imamachi et al.
METHODS (2014)
iCLIP: Protein-RNA interactions at nucleotide resolution
Ina Huppertz et al.
METHODS (2014)
Databases for lncRNAs: a comparative evaluation of emerging tools
Sabrina Fritah et al.
RNA (2014)
Highly Multiplexed Subcellular RNA Sequencing in Situ
Je Hyuk Lee et al.
SCIENCE (2014)
Transcriptional regulatory functions of nuclear long noncoding RNAs
Keith W. Vance et al.
TRENDS IN GENETICS (2014)
Long non-coding RNA UCA1 promotes breast tumor growth by suppression of p27 (Kip1)
J. Huang et al.
CELL DEATH & DISEASE (2014)
PAR-CLIP analysis uncovers AUF1 impact on target RNA fate and genome integrity
Je-Hyun Yoon et al.
NATURE COMMUNICATIONS (2014)
The oestrogen receptor alpha-regulated lncRNA NEAT1 is a critical modulator of prostate cancer
Dimple Chakravarty et al.
NATURE COMMUNICATIONS (2014)
The IncRNAs PCGEM1 and PRNCR1 are not implicated in castration resistant prostate cancer
John R. Prensner et al.
ONCOTARGET (2014)
Long non-coding RNA GAS5 regulates apoptosis in prostate cancer cell lines
M. R. Pickard et al.
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE (2013)
Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression
Lei S. Qi et al.
CELL (2013)
CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes
Luke A. Gilbert et al.
CELL (2013)
Tackling Structures of Long Noncoding RNAs
Irina V. Novikova et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2013)
Long non-coding RNA: a new player in cancer
Hua Zhang et al.
JOURNAL OF HEMATOLOGY & ONCOLOGY (2013)
Posttranscriptional Gene Regulation by Long Noncoding RNA
Je-Hyun Yoon et al.
JOURNAL OF MOLECULAR BIOLOGY (2013)
The Observer Effect in Genome-wide Surveys of Protein-RNA Interactions
Kasandra J. Riley et al.
MOLECULAR CELL (2013)
Control of somatic tissue differentiation by the long non-coding RNA TINCR
Markus Kretz et al.
NATURE (2013)
Effect of natural genetic variation on enhancer selection and function
S. Heinz et al.
NATURE (2013)
lncRNA-dependent mechanisms of androgen-receptor-regulated gene activation programs
Liuqing Yang et al.
NATURE (2013)
Natural RNA circles function as efficient microRNA sponges
Thomas B. Hansen et al.
NATURE (2013)
RNA SHAPE analysis in living cells
Robert C. Spitale et al.
NATURE CHEMICAL BIOLOGY (2013)
The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex
John R. Prensner et al.
NATURE GENETICS (2013)
RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond
Stephane E. Castel et al.
NATURE REVIEWS GENETICS (2013)
RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts
Sarah Geisler et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2013)
3S: Shotgun secondary structure determination of long non-coding RNAs
Irina V. Novikova et al.
METHODS (2013)
LncRNA loc285194 is a p53-regulated tumor suppressor
Qian Liu et al.
NUCLEIC ACIDS RESEARCH (2013)
ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering
Thomas Gaj et al.
TRENDS IN BIOTECHNOLOGY (2013)
Identification and function of long non-coding RNA
Carl Emst et al.
FRONTIERS IN CELLULAR NEUROSCIENCE (2013)
Genome-wide determination of RNA stability reveals hundreds of short-lived noncoding transcripts in mammals
Hidenori Tani et al.
GENOME RESEARCH (2012)
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
Thomas Derrien et al.
GENOME RESEARCH (2012)
Elevation of Highly Up-regulated in Liver Cancer (HULC) by Hepatitis B Virus X Protein Promotes Hepatoma Cell Proliferation via Down-regulating p18
Yumei Du et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2012)
Silencing disease genes in the laboratory and the clinic
Jonathan K. Watts et al.
JOURNAL OF PATHOLOGY (2012)
Modular regulatory principles of large non-coding RNAs
Mitchell Guttman et al.
NATURE (2012)
RNA-guided genetic silencing systems in bacteria and archaea
Blake Wiedenheft et al.
NATURE (2012)
Combined RNAi and localization for functionally dissecting long noncoding RNAs
Debojyoti Chakraborty et al.
NATURE METHODS (2012)
Protein-RNA interactions: new genomic technologies and perspectives
Julian Koenig et al.
NATURE REVIEWS GENETICS (2012)
Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans
Karen Adelman et al.
NATURE REVIEWS GENETICS (2012)
A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity
Martin Jinek et al.
SCIENCE (2012)
Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
Yoichiro Sugimoto et al.
GENOME BIOLOGY (2012)
Molecular Mechanisms of Long Noncoding RNAs
Kevin C. Wang et al.
MOLECULAR CELL (2011)
lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3′ UTRs via Alu elements
Chenguang Gong et al.
NATURE (2011)
Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression
John R. Prensner et al.
NATURE BIOTECHNOLOGY (2011)
Direct visualization of the co-transcriptional assembly of a nuclear body by noncoding RNAs
Yuntao S. Mao et al.
NATURE CELL BIOLOGY (2011)
Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters
Tiffany Hung et al.
NATURE GENETICS (2011)
Small RNA sorting: matchmaking for Argonautes
Benjamin Czech et al.
NATURE REVIEWS GENETICS (2011)
RNA sequencing: advances, challenges and opportunities
Fatih Ozsolak et al.
NATURE REVIEWS GENETICS (2011)
Diagnostic performance of the PCA3 urine test
George Leighton Lee et al.
NATURE REVIEWS UROLOGY (2011)
Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast
Grzegorz Kudla et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
RNA Mimics of Green Fluorescent Protein
Jeremy S. Paige et al.
SCIENCE (2011)
The Emergence of lncRNAs in Cancer Biology
John R. Prensner et al.
CANCER DISCOVERY (2011)
A Large Intergenic Noncoding RNA Induced by p53 Mediates Global Gene Repression in the p53 Response
Maite Huarte et al.
CELL (2010)
The Nuclear-Retained Noncoding RNA MALAT1 Regulates Alternative Splicing by Modulating SR Splicing Factor Phosphorylation
Vidisha Tripathi et al.
MOLECULAR CELL (2010)
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
Rajnish A. Gupta et al.
NATURE (2010)
Genome-wide measurement of RNA secondary structure in yeast
Michael Kertesz et al.
NATURE (2010)
A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
Laura Poliseno et al.
NATURE (2010)
Toward global RNA structure analysis
David M. Mauger et al.
NATURE BIOTECHNOLOGY (2010)
Inosine cyanoethylation identifies A-to-I RNA editing sites in the human transcriptome
Masayuki Sakurai et al.
NATURE CHEMICAL BIOLOGY (2010)
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing
Jason G. Underwood et al.
NATURE METHODS (2010)
CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer
Jiayi Wang et al.
NUCLEIC ACIDS RESEARCH (2010)
Long Noncoding RNA as Modular Scaffold of Histone Modification Complexes
Miao-Chih Tsai et al.
SCIENCE (2010)
An Architectural Role for a Nuclear Noncoding RNA: NEAT1 RNA Is Essential for the Structure of Paraspeckles
Christine M. Clemson et al.
MOLECULAR CELL (2009)
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
Mitchell Guttman et al.
NATURE (2009)
RNA-Seq: a revolutionary tool for transcriptomics
Zhong Wang et al.
NATURE REVIEWS GENETICS (2009)
GAS5, a non-protein-coding RNA, controls apoptosis and is downregulated in breast cancer
M. Mourtada-Maarabouni et al.
ONCOGENE (2009)
The Air Noncoding RNA Epigenetically Silences Transcription by Targeting G9a to Chromatin
Takashi Nagano et al.
SCIENCE (2008)
Polycomb Proteins Targeted by a Short Repeat RNA to the Mouse X Chromosome
Jing Zhao et al.
SCIENCE (2008)
Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
Leighton J. Core et al.
SCIENCE (2008)
Altered adenosine-to-inosine RNA, editing in human cancer
Nurit Paz et al.
GENOME RESEARCH (2007)
Functional demarcation of active and silent chromatin domains in human HOX loci by Noncoding RNAs
John L. Rinn et al.
CELL (2007)
Enzymatically prepared RNAi libraries
Frank Buchholz et al.
NATURE METHODS (2006)
Antisense transcription in the mammalian transcriptome
S Katayama et al.
SCIENCE (2005)
RNA structure analysis at single nucleotide resolution by selective 2′-hydroxyl acylation and primer extension (SHAPE)
EJ Merino et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2005)
Network biology:: Understanding the cell's functional organization
AL Barabási et al.
NATURE REVIEWS GENETICS (2004)
An endoribonuclease-prepared siRNA screen in human cells identifies genes essential for cell division
R Kittler et al.
NATURE (2004)
Unravelling the general properties of siRNAs: strength in numbers and lessons from the past
J Hall
NATURE REVIEWS GENETICS (2004)
mRNA localization: Message on the move
RP Jansen
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2001)