期刊
GENOME BIOLOGY
卷 21, 期 1, 页码 -出版社
BMC
DOI: 10.1186/s13059-020-02014-2
关键词
Microbiome; Metagenomic classifier; ConClave sorting; Fungi
资金
- NHMRC Centre of Excellence [APP1102962]
- Australian Laurate Fellowship [FL170100022]
- NHMRC Practitioner Fellowship [NHMRC G1104232]
- European Union's Horizon 2020 research and innovation program [643476]
- Novo Nordisk Foundation [NNF16OC0021856]
- Australian Department of Health
There is an increasing demand for accurate and fast metagenome classifiers that can not only identify bacteria, but all members of a microbial community. We used a recently developed concept in read mapping to develop a highly accurate metagenomic classification pipeline named CCMetagen. The pipeline substantially outperforms other commonly used software in identifying bacteria and fungi and can efficiently use the entire NCBI nucleotide collection as a reference to detect species with incomplete genome data from all biological kingdoms. CCMetagen is user-friendly, and the results can be easily integrated into microbial community analysis software for streamlined and automated microbiome studies.
作者
我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。
推荐
暂无数据