4.8 Article

Niche partitioning of diverse sulfur-oxidizing bacteria at hydrothermal vents

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison

Michael Richter et al.

BIOINFORMATICS (2016)

Article Microbiology

Heterotrophic Proteobacteria in the vicinity of diffuse hydrothermal venting

Dimitri V. Meier et al.

ENVIRONMENTAL MICROBIOLOGY (2016)

Article Biochemistry & Molecular Biology

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Donovan H. Parks et al.

GENOME RESEARCH (2015)

Article Geochemistry & Geophysics

Submarine venting of magmatic volatiles in the Eastern Manus Basin, Papua New Guinea

Jeffrey S. Seewald et al.

GEOCHIMICA ET COSMOCHIMICA ACTA (2015)

Article Geochemistry & Geophysics

Identification of sulfur sources and isotopic equilibria in submarine hot-springs using multiple sulfur isotopes

Jill M. McDermott et al.

GEOCHIMICA ET COSMOCHIMICA ACTA (2015)

Article Geochemistry & Geophysics

Origin of Silicic Magmas at Spreading Centres-an Example from the South East Rift, Manus Basin

Christoph Beier et al.

JOURNAL OF PETROLOGY (2015)

Article Multidisciplinary Sciences

Swarm v2: highly-scalable and high-resolution amplicon clustering

Frederic Mahe et al.

Article Biochemical Research Methods

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis

BIOINFORMATICS (2014)

Article Microbiology

Microbial lipids reveal carbon assimilation patterns on hydrothermal sulfide chimneys

Eoghan P. Reeves et al.

ENVIRONMENTAL MICROBIOLOGY (2014)

Article Biochemistry & Molecular Biology

Pfam: the protein families database

Robert D. Finn et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biotechnology & Applied Microbiology

SUP05 Dominates the Gammaproteobacterial Sulfur Oxidizer Assemblages in Pelagic Redoxclines of the Central Baltic and Black Seas

Sabine Glaubitz et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)

Article Microbiology

Microbial community structure across fluid gradients in the Juan de Fuca Ridge hydrothermal system

Rika E. Anderson et al.

FEMS MICROBIOLOGY ECOLOGY (2013)

Article Ecology

Isolation of an aerobic sulfur oxidizer from the SUP05/Arctic96BD-19 clade

Katharine T. Marshall et al.

ISME JOURNAL (2013)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

Christian Quast et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Environmental Sciences

The versatile in situ gene expression of an Epsilonproteobacteria-dominated biofilm from a hydrothermal chimney

Hakon Dahle et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2013)

Article Biochemical Research Methods

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

Elmar Pruesse et al.

BIOINFORMATICS (2012)

Article Biochemical Research Methods

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2012)

Article Oceanography

Diffuse Flow On and Around Hydrothermal Vents at Mid-Ocean Ridges

Karen Bemis et al.

OCEANOGRAPHY (2012)

Article Multidisciplinary Sciences

Genome and physiology of a model Epsilonproteobacterium responsible for sulfide detoxification in marine oxygen depletion zones

Jana Grote et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Microbiology

The binning of rnetagenomic contings for physiology of mixed cultures

Marc Strous et al.

FRONTIERS IN MICROBIOLOGY (2012)

Article Geochemistry & Geophysics

Catabolic and anabolic energy for chemolithoautotrophs in deep-sea hydrothermal systems hosted in different rock types

Jan P. Amend et al.

GEOCHIMICA ET COSMOCHIMICA ACTA (2011)

Article Mathematical & Computational Biology

UniProt Knowledgebase: a hub of integrated protein data

Michele Magrane

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2011)

Article Biochemical Research Methods

Accelerated Profile HMM Searches

Sean R. Eddy

PLOS COMPUTATIONAL BIOLOGY (2011)

Article Oceanography

New constraints on methane fluxes and rates of anaerobic methane oxidation in a Gulf of Mexico brine pool via in situ mass spectrometry

Scott D. Wankel et al.

DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY (2010)

Article Multidisciplinary Sciences

FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments

Morgan N. Price et al.

PLOS ONE (2010)

Article Multidisciplinary Sciences

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

Sebastian Luecker et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biotechnology & Applied Microbiology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

Patrick D. Schloss et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Article Biochemical Research Methods

BLAST plus : architecture and applications

Christiam Camacho et al.

BMC BIOINFORMATICS (2009)

Article Microbiology

Individual hydrothermal vents at Axial Seamount harbor distinct subseafloor microbial communities

Andrew D. Opatkiewicz et al.

FEMS MICROBIOLOGY ECOLOGY (2009)

Article Biochemistry & Molecular Biology

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

Morgan N. Price et al.

MOLECULAR BIOLOGY AND EVOLUTION (2009)

Article Biochemical Research Methods

Accurate determination of microbial diversity from 454 pyrosequencing data

Christopher Quince et al.

NATURE METHODS (2009)

Article Biochemical Research Methods

JCoast -: A biologist-centric software tool for data mining and comparison of prokaryotic (meta) genomes

Michael Richter et al.

BMC BIOINFORMATICS (2008)

Article Biotechnology & Applied Microbiology

The RAST server: Rapid annotations using subsystems technology

Ramy K. Aziz et al.

BMC GENOMICS (2008)

Review Microbiology

Deep-sea vent chemoautotrophs: diversity, biochemistry and ecological significance

Satoshi Nakagawa et al.

FEMS MICROBIOLOGY ECOLOGY (2008)

Article Biotechnology & Applied Microbiology

Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans

Stefan M. Sievert et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)

Article Multidisciplinary Sciences

Microbial population structures in the deep marine biosphere

Julie A. Huber et al.

SCIENCE (2007)

Article Biochemistry & Molecular Biology

The SoxYZ complex carries sulfur cycle intermediates on a peptide swinging arm

Veronique Sauve et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2007)

Article Multidisciplinary Sciences

Deep-sea vent ε-proteobacterial genomes provide insights into emergence of pathogens

Satoshi Nakagawa et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Microbiology

DNA-DNA hybridization values and their relationship to whole-genome sequence similarities

Johan Goris et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2007)

Review Microbiology

The versatile epsilon-proteobacteria: key players in sulphidic habitats

Barbara J. Campbell et al.

NATURE REVIEWS MICROBIOLOGY (2006)

Review Microbiology

Prokaryotic sulfur oxidation

CG Friedrich et al.

CURRENT OPINION IN MICROBIOLOGY (2005)

Article Multidisciplinary Sciences

Genomic insights that advance the species definition for prokaryotes

KT Konstantinidis et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biotechnology & Applied Microbiology

Two bactetia phylotypes are predominant in the Suiyo Seamount hydrothermal plume

M Sunamura et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)

Article Biochemistry & Molecular Biology

ARB:: a software environment for sequence data

W Ludwig et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

OrthoMCL: Identification of ortholog groups for eukaryotic genomes

L Li et al.

GENOME RESEARCH (2003)

Article Biotechnology & Applied Microbiology

Filamentous Epsilonproteobacteria dominate microbial mats from sulfidic cave springs

AS Engel et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)

Article Biochemistry & Molecular Biology

GenDB -: an open source genome annotation system for prokaryote genomes

F Meyer et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Microbiology

Novel genes coding for lithotrophic sulfur oxidation of Paracoccus pantotrophus GB17

CG Friedrich et al.

JOURNAL OF BACTERIOLOGY (2000)