相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Identification of bacterial pathogens and antimicrobial resistance directly from clinical urines by nanopore-based metagenomic sequencing
K. Schmidt et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2017)
Clinical metagenomics of bone and joint infections: a proof of concept study
Etienne Ruppe et al.
SCIENTIFIC REPORTS (2017)
Fatal Psychrobacter sp infection in a pediatric patient with meningitis identified by metagenomic next-generation sequencing in cerebrospinal fluid
Ortiz-Alcantara Joanna Maria et al.
ARCHIVES OF MICROBIOLOGY (2016)
Decontamination of 16S rRNA gene amplicon sequence datasets based on bacterial load assessment by qPCR
Vladimir Lazarevic et al.
BMC MICROBIOLOGY (2016)
High-throughput sequencing of cerebrospinal fluid for diagnosis of chronic Propionibacterium acnes meningitis in an allogeneic stem cell transplant recipient
K. M. Wylie et al.
TRANSPLANT INFECTIOUS DISEASE (2016)
CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers
Rachid Ounit et al.
BMC GENOMICS (2015)
Diagnosis of Neuroinvasive Astrovirus Infection in an Immunocompromised Adult With Encephalitis by Unbiased Next-Generation Sequencing
Samia N. Naccache et al.
CLINICAL INFECTIOUS DISEASES (2015)
Metagenomic analysis for detecting pathogens in culture-negative infective endocarditis
Yuto Fukui et al.
JOURNAL OF INFECTION AND CHEMOTHERAPY (2015)
Protocol for Metagenomic Virus Detection in Clinical Specimens
Claudia Kohl et al.
EMERGING INFECTIOUS DISEASES (2015)
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
Jiajie Zhang et al.
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
Susannah J. Salter et al.
BMC BIOLOGY (2014)
Erm(X)-mediated resistance to macrolides, lincosamides and streptogramins in Actinobaculum schaalii
Constantin Hays et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2014)
Rapid Whole-Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples
Henrik Hasman et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2014)
Challenges in the culture-independent analysis of oral and respiratory samples from intubated patients
Vladimir Lazarevic et al.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2014)
Kraken: ultrafast metagenomic sequence classification using exact alignments
Derrick E. Wood et al.
GENOME BIOLOGY (2014)
Identification of acquired antimicrobial resistance genes
Ea Zankari et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2012)
Metagenomic microbial community profiling using unique clade-specific marker genes
Nicola Segata et al.
NATURE METHODS (2012)
Diagnosis of Invasive Aspergillosis by a Commercial Real-Time PCR Assay for Aspergillus DNA in Bronchoalveolar Lavage Fluid Samples from High-Risk Patients Compared to a Galactomannan Enzyme Immunoassay
Riccardo Torelli et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2011)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
Systematic Internal Transcribed Spacer Sequence Analysis for Identification of Clinical Mold Isolates in Diagnostic Mycology: a 5-Year Study
Diana E. Ciardo et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Non Mycobacterial Virulence Genes in the Genome of the Emerging Pathogen Mycobacterium abscessus
Fabienne Ripoll et al.
PLOS ONE (2009)
Defining the normal bacterial flora of the oral cavity
JA Aas et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2005)
Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora
A Tauch et al.
JOURNAL OF BACTERIOLOGY (2005)
Artemis: sequence visualization and annotation
K Rutherford et al.
BIOINFORMATICS (2000)