3.8 Proceedings Paper

Centrality Speeds the Subgraph Isomorphism Search Up in Target Aware Contexts

出版社

SPRINGER INTERNATIONAL PUBLISHING AG
DOI: 10.1007/978-3-030-34585-3_3

关键词

Subgraph isomorphism; Biological graphs; Variable orderings; Graph centrality; Label frequency

资金

  1. GNCS-INDAM
  2. Fondo Sociale Europeo
  3. National Research Council Flagship Projects Interomics
  4. Italian Ministry of education, Universities and Research (MIUR)

向作者/读者索取更多资源

The subgraph isomorphism (SubGI) problem is known to be a NP-Complete problem. Several methodologies use heuristic approaches to solve it, differing into the strategy to search the occurrences of a graph into another. This choice strongly influences their computational effort requirement. We investigate seven search strategies where global and local topological properties of the graphs are exploited by means of weighted graph centrality measures. Results on benchmarks of biological networks show the competitiveness of the proposed seven alternatives and that, among them, local strategies predominate on sparse target graphs, and closeness- and eigenvector-based strategies outperform on dense graphs.

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